Detailed information NTG0232687

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AYN42_RS14390
• Genome accession: NZ_CP027352
• Coordinates: 2524512..2525504 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2012C-4606
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2519512..2530504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYN42_RS14365	ygbN	2520167..2521531 (+)	1365	WP_000104439.1	GntP family transporter	-
AYN42_RS14370	-	2521570..2521806 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AYN42_RS14375	-	2521817..2523244 (-)	1428	WP_032341778.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AYN42_RS14380	-	2523244..2523837 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AYN42_RS14385	-	2523984..2524391 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
AYN42_RS14390	rpoS	2524512..2525504 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AYN42_RS14395	nlpD	2525567..2526661 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AYN42_RS14400	pcm	2526846..2527472 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AYN42_RS14405	surE	2527466..2528227 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AYN42_RS14410	truD	2528208..2529257 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
AYN42_RS14415	ispF	2529254..2529733 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AYN42_RS14420	ispD	2529733..2530443 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232687 AYN42_RS14390 WP_000081550.1 2524512..2525504(-) (rpoS) [Escherichia coli strain 2012C-4606]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232687 AYN42_RS14390 WP_000081550.1 2524512..2525504(-) (rpoS) [Escherichia coli strain 2012C-4606]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715