Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AYN42_RS14085 Genome accession   NZ_CP027352
Coordinates   2467502..2468017 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2012C-4606     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2462502..2473017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYN42_RS14060 ygaZ 2462901..2463638 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AYN42_RS14065 ygaH 2463628..2463963 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AYN42_RS14070 emrR 2464054..2464584 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AYN42_RS14075 emrA 2464711..2465883 (+) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AYN42_RS14080 emrB 2465900..2467438 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AYN42_RS14085 luxS 2467502..2468017 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AYN42_RS14090 gshA 2468167..2469723 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AYN42_RS14095 yqaA 2469796..2470224 (-) 429 WP_001287457.1 YqaA family protein -
  AYN42_RS14100 yqaB 2470221..2470787 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AYN42_RS14130 csrA 2472112..2472297 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=232684 AYN42_RS14085 WP_001130207.1 2467502..2468017(-) (luxS) [Escherichia coli strain 2012C-4606]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232684 AYN42_RS14085 WP_001130207.1 2467502..2468017(-) (luxS) [Escherichia coli strain 2012C-4606]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731