Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AYN42_RS09560 Genome accession   NZ_CP027352
Coordinates   1611566..1612993 (+) Length   475 a.a.
NCBI ID   WP_000980547.1    Uniprot ID   -
Organism   Escherichia coli strain 2012C-4606     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606566..1617993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYN42_RS31585 - 1606735..1607106 (+) 372 WP_001295631.1 IS110 family transposase -
  AYN42_RS32050 - 1607377..1607742 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  AYN42_RS09540 tmaR 1607843..1608172 (-) 330 WP_000450409.1 DUF496 family protein -
  AYN42_RS09545 yeeA 1608344..1609402 (-) 1059 WP_001200887.1 FUSC family protein -
  AYN42_RS09550 sbmC 1609600..1610073 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  AYN42_RS09555 dacD 1610191..1611357 (-) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AYN42_RS09560 sbcB 1611566..1612993 (+) 1428 WP_000980547.1 exodeoxyribonuclease I Machinery gene
  AYN42_RS09565 tsuB 1613036..1613263 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AYN42_RS09570 tsuA 1613277..1614335 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  AYN42_RS09575 plaP 1614514..1615872 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AYN42_RS09580 yoeI 1615862..1615924 (-) 63 WP_010723108.1 membrane protein YoeI -
  AYN42_RS09585 yeeY 1616139..1617068 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AYN42_RS09590 yeeZ 1617114..1617938 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.83 Da        Isoelectric Point: 5.3498

>NTDB_id=232674 AYN42_RS09560 WP_000980547.1 1611566..1612993(+) (sbcB) [Escherichia coli strain 2012C-4606]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=232674 AYN42_RS09560 WP_000980547.1 1611566..1612993(+) (sbcB) [Escherichia coli strain 2012C-4606]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATACCG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579