Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   VV1_RS09490 Genome accession   NC_004459
Coordinates   2001384..2001986 (+) Length   200 a.a.
NCBI ID   WP_011079901.1    Uniprot ID   Q7MIV4
Organism   Vibrio vulnificus CMCP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996384..2006986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS23145 - 1997645..1998037 (+) 393 WP_072603452.1 YbaN family protein -
  VV1_RS09475 (VV1_2002) apt 1998203..1998748 (+) 546 WP_011079898.1 adenine phosphoribosyltransferase -
  VV1_RS09480 (VV1_2003) dnaX 1998757..2000961 (+) 2205 WP_011079899.1 DNA polymerase III subunit gamma/tau -
  VV1_RS09485 (VV1_2004) - 2001039..2001368 (+) 330 WP_011079900.1 YbaB/EbfC family nucleoid-associated protein -
  VV1_RS09490 (VV1_2005) recR 2001384..2001986 (+) 603 WP_011079901.1 recombination mediator RecR Machinery gene
  VV1_RS09495 (VV1_2006) - 2002048..2003193 (-) 1146 WP_011079902.1 hypothetical protein -
  VV1_RS09500 (VV1_2007) - 2003209..2004243 (-) 1035 WP_011079903.1 DUF2860 family protein -
  VV1_RS09505 (VV1_2008) - 2004310..2005917 (-) 1608 WP_224634992.1 ATP-binding protein -
  VV1_RS09510 (VV1_2009) - 2005914..2006633 (-) 720 WP_043921089.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21870.99 Da        Isoelectric Point: 6.2673

>NTDB_id=23266 VV1_RS09490 WP_011079901.1 2001384..2001986(+) (recR) [Vibrio vulnificus CMCP6]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSHAMTEIGHCNECRTFTEEDVCHICNNPKRQEN
GLLCVVESPADIAAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDIKEVILATNPTVEGEATAHYIAEL
CREHKVDASRIAHGVPVGGELELVDGTTLSHSLLGRHKLN

Nucleotide


Download         Length: 603 bp        

>NTDB_id=23266 VV1_RS09490 WP_011079901.1 2001384..2001986(+) (recR) [Vibrio vulnificus CMCP6]
ATGCGTACCAGCCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTTTGCCTGGGGTTGGCCCCAAGTCAGCACAGCG
TATGGCCTTTCATTTGTTACAGCGAGATAGAAAAGGCGGCCTGCAGCTTGCGGATGCATTAAGTCATGCCATGACGGAAA
TTGGTCACTGTAACGAGTGCCGTACTTTTACCGAAGAAGACGTTTGTCATATCTGCAACAACCCAAAACGCCAAGAAAAC
GGATTATTGTGTGTGGTCGAAAGCCCTGCCGATATCGCTGCGGTGGAAGCCACAGGACAATTCTCTGGTCGTTACTTTGT
GTTGATGGGGCACCTATCACCGCTTGATGGTATTGGACCTAGTGATATTGGCCTCGATGTCCTCGATTATCGTCTGCGTC
GCGGTGATATCAAAGAAGTGATCTTAGCGACCAACCCTACCGTGGAAGGTGAAGCGACTGCGCACTACATCGCTGAACTT
TGTCGAGAGCATAAAGTGGACGCCAGTCGAATTGCTCATGGTGTGCCCGTCGGTGGGGAGCTTGAGCTGGTGGATGGCAC
TACGCTCTCCCATTCGTTATTGGGCAGACACAAACTCAACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MIV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.5

100

0.435

Multiple sequence alignment