Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ND05_RS25045 Genome accession   NZ_CP027351
Coordinates   4624941..4625456 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2014C-3655     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4619941..4630456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND05_RS25020 ygaZ 4620340..4621077 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  ND05_RS25025 ygaH 4621067..4621402 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  ND05_RS25030 emrR 4621493..4622023 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ND05_RS25035 emrA 4622150..4623322 (+) 1173 WP_001370257.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ND05_RS25040 emrB 4623339..4624877 (+) 1539 WP_001370184.1 multidrug efflux MFS transporter permease subunit EmrB -
  ND05_RS25045 luxS 4624941..4625456 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ND05_RS25050 gshA 4625606..4627162 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  ND05_RS25055 yqaA 4627235..4627663 (-) 429 WP_001287454.1 YqaA family protein -
  ND05_RS25060 yqaB 4627660..4628226 (-) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ND05_RS25090 csrA 4629684..4629869 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=232645 ND05_RS25045 WP_001130211.1 4624941..4625456(-) (luxS) [Escherichia coli strain 2014C-3655]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232645 ND05_RS25045 WP_001130211.1 4624941..4625456(-) (luxS) [Escherichia coli strain 2014C-3655]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731