Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ND05_RS12265 Genome accession   NZ_CP027351
Coordinates   2325166..2325795 (+) Length   209 a.a.
NCBI ID   WP_000841914.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3655     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320166..2330795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND05_RS12240 ycbZ 2320556..2322316 (-) 1761 WP_000156526.1 Lon protease family protein -
  ND05_RS12245 matP 2322502..2322954 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ND05_RS12250 ompA 2323029..2324081 (-) 1053 WP_000750419.1 porin OmpA -
  ND05_RS12260 sulA 2324438..2324947 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ND05_RS12265 sxy/tfoX 2325166..2325795 (+) 630 WP_000841914.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ND05_RS12270 yccS 2325758..2327920 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ND05_RS12275 yccF 2327930..2328376 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ND05_RS12280 helD 2328499..2330553 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.97 Da        Isoelectric Point: 9.2180

>NTDB_id=232623 ND05_RS12265 WP_000841914.1 2325166..2325795(+) (sxy/tfoX) [Escherichia coli strain 2014C-3655]
MKSPSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=232623 ND05_RS12265 WP_000841914.1 2325166..2325795(+) (sxy/tfoX) [Escherichia coli strain 2014C-3655]
ATGAAAAGCCCCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995