Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM398_RS17985 Genome accession   NZ_CP021691
Coordinates   3500430..3501059 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0151     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3495430..3506059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM398_RS17970 (AM398_17900) helD 3495672..3497726 (-) 2055 WP_001295354.1 DNA helicase IV -
  AM398_RS17975 (AM398_17905) yccF 3497849..3498295 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AM398_RS17980 (AM398_17910) yccS 3498305..3500467 (+) 2163 WP_000875058.1 YccS family putative transporter -
  AM398_RS17985 (AM398_17915) sxy/tfoX 3500430..3501059 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM398_RS17990 (AM398_17920) sulA 3501278..3501787 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM398_RS18000 (AM398_17930) ompA 3502144..3503184 (+) 1041 WP_039023125.1 porin OmpA -
  AM398_RS18005 (AM398_17935) matP 3503260..3503712 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM398_RS18010 (AM398_17940) ycbZ 3503898..3505658 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=232588 AM398_RS17985 WP_000839153.1 3500430..3501059(-) (sxy/tfoX) [Escherichia coli strain AR_0151]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=232588 AM398_RS17985 WP_000839153.1 3500430..3501059(-) (sxy/tfoX) [Escherichia coli strain AR_0151]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment