Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM393_RS20230 Genome accession   NZ_CP021685
Coordinates   4069934..4070530 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain AR_0146     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4064934..4075530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM393_RS20205 (AM393_20140) - 4065126..4066883 (-) 1758 WP_002898401.1 Lon protease family protein -
  AM393_RS20210 (AM393_20145) matP 4067069..4067521 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM393_RS20215 (AM393_20150) ompA 4067653..4068723 (-) 1071 WP_002898408.1 porin OmpA -
  AM393_RS20220 (AM393_20155) sulA 4069076..4069585 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  AM393_RS20230 (AM393_20165) sxy/tfoX 4069934..4070530 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  AM393_RS20235 (AM393_20170) yccS 4070544..4072679 (-) 2136 WP_002898422.1 YccS family putative transporter -
  AM393_RS20240 (AM393_20175) - 4072697..4073143 (-) 447 WP_002898425.1 YccF domain-containing protein -
  AM393_RS20245 (AM393_20180) helD 4073268..4075322 (+) 2055 WP_002898429.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=232545 AM393_RS20230 WP_004150836.1 4069934..4070530(+) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0146]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=232545 AM393_RS20230 WP_004150836.1 4069934..4070530(+) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0146]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment