Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AZF34_RS15585 Genome accession   NZ_CP027347
Coordinates   2846454..2846969 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4361     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2841454..2851969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZF34_RS15560 ygaZ 2841853..2842590 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AZF34_RS15565 ygaH 2842580..2842915 (+) 336 WP_000119771.1 L-valine transporter subunit YgaH -
  AZF34_RS15570 emrR 2843006..2843536 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AZF34_RS15575 emrA 2843663..2844835 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AZF34_RS15580 emrB 2844852..2846390 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AZF34_RS15585 luxS 2846454..2846969 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AZF34_RS15590 gshA 2847119..2848675 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AZF34_RS15595 yqaA 2848748..2849176 (-) 429 WP_001287457.1 YqaA family protein -
  AZF34_RS15600 yqaB 2849173..2849739 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AZF34_RS15630 csrA 2851063..2851248 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=232535 AZF34_RS15585 WP_001130207.1 2846454..2846969(-) (luxS) [Escherichia coli strain 2013C-4361]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232535 AZF34_RS15585 WP_001130207.1 2846454..2846969(-) (luxS) [Escherichia coli strain 2013C-4361]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731