Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6N23_RS20755 Genome accession   NZ_CP027342
Coordinates   3968417..3969046 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2014C-4587     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3963417..3974046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N23_RS20740 helD 3963659..3965713 (-) 2055 WP_000420536.1 DNA helicase IV -
  C6N23_RS20745 yccF 3965836..3966282 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6N23_RS20750 yccS 3966292..3968454 (+) 2163 WP_000875015.1 YccS family putative transporter -
  C6N23_RS20755 sxy/tfoX 3968417..3969046 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6N23_RS20760 sulA 3969265..3969774 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6N23_RS20770 ompA 3970131..3971183 (+) 1053 WP_000750419.1 porin OmpA -
  C6N23_RS20775 matP 3971259..3971711 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6N23_RS20780 ycbZ 3971897..3973657 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=232487 C6N23_RS20755 WP_000839153.1 3968417..3969046(-) (sxy/tfoX) [Escherichia coli strain 2014C-4587]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=232487 C6N23_RS20755 WP_000839153.1 3968417..3969046(-) (sxy/tfoX) [Escherichia coli strain 2014C-4587]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment