Detailed information NTG0232463

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6N23_RS09700
• Genome accession: NZ_CP027342
• Coordinates: 1903971..1904963 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-4587
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1898971..1909963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N23_RS09670	ispD	1899032..1899742 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6N23_RS09675	ispF	1899742..1900221 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6N23_RS09680	truD	1900218..1901267 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6N23_RS09685	surE	1901248..1902009 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6N23_RS09690	pcm	1902003..1902629 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6N23_RS09695	nlpD	1902814..1903908 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6N23_RS09700	rpoS	1903971..1904963 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6N23_RS09705	-	1905084..1905491 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
C6N23_RS09710	-	1905638..1906231 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6N23_RS09715	-	1906231..1907658 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6N23_RS09720	-	1907669..1907905 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6N23_RS09725	ygbN	1907944..1909308 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232463 C6N23_RS09700 WP_000081550.1 1903971..1904963(+) (rpoS) [Escherichia coli strain 2014C-4587]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232463 C6N23_RS09700 WP_000081550.1 1903971..1904963(+) (rpoS) [Escherichia coli strain 2014C-4587]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715