Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | S100141_RS19260 | Genome accession | NZ_CP021669 |
| Coordinates | 3646417..3646707 (-) | Length | 96 a.a. |
| NCBI ID | WP_085959887.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain SRCM100141 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3641417..3651707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S100141_RS19220 (S100141_03887) | - | 3641441..3641770 (+) | 330 | WP_003178156.1 | cyclic-di-AMP receptor | - |
| S100141_RS19225 (S100141_03888) | - | 3641782..3642222 (+) | 441 | WP_003178158.1 | YaaR family protein | - |
| S100141_RS19230 (S100141_03889) | holB | 3642234..3643223 (+) | 990 | WP_003178160.1 | DNA polymerase III subunit delta' | - |
| S100141_RS19235 (S100141_03890) | - | 3643226..3644053 (+) | 828 | WP_003178162.1 | stage 0 sporulation family protein | - |
| S100141_RS19240 (S100141_03891) | yabA | 3644068..3644430 (+) | 363 | WP_003178164.1 | DNA replication initiation control protein YabA | - |
| S100141_RS19245 (S100141_03892) | - | 3644495..3645238 (+) | 744 | WP_003178166.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| S100141_RS19250 (S100141_03893) | - | 3645225..3645518 (+) | 294 | WP_003178169.1 | GIY-YIG nuclease family protein | - |
| S100141_RS19255 (S100141_03894) | rsmI | 3645493..3646368 (+) | 876 | WP_025805862.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| S100141_RS19260 (S100141_03895) | abrB | 3646417..3646707 (-) | 291 | WP_085959887.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| S100141_RS19265 (S100141_03896) | metG | 3647215..3649203 (+) | 1989 | WP_025805864.1 | methionine--tRNA ligase | - |
| S100141_RS19270 (S100141_03897) | - | 3649288..3650055 (+) | 768 | WP_017474310.1 | TatD family hydrolase | - |
| S100141_RS19275 (S100141_03898) | - | 3650172..3651497 (+) | 1326 | WP_003178178.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10680.43 Da Isoelectric Point: 5.1848
>NTDB_id=232395 S100141_RS19260 WP_085959887.1 3646417..3646707(-) (abrB) [Bacillus licheniformis strain SRCM100141]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=232395 S100141_RS19260 WP_085959887.1 3646417..3646707(-) (abrB) [Bacillus licheniformis strain SRCM100141]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |