Detailed information NTG0232393

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: S100141_RS19015
• Genome accession: NZ_CP021669
• Coordinates: 3600665..3601777 (+)
• Length: 370 a.a.
• NCBI ID: WP_016885621.1
• Uniprot ID: -
• Organism: Bacillus licheniformis strain SRCM100141
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3595665..3606777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S100141_RS18990 (S100141_03843)	rnpA	3596394..3596753 (-)	360	WP_003178055.1	ribonuclease P protein component	-
S100141_RS18995	rpmH	3596838..3596972 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
S100141_RS19000 (S100141_03844)	dnaA	3597612..3598952 (+)	1341	WP_009330034.1	chromosomal replication initiator protein DnaA	-
S100141_RS19005 (S100141_03845)	dnaN	3599129..3600265 (+)	1137	WP_003178080.1	DNA polymerase III subunit beta	-
S100141_RS19010 (S100141_03846)	yaaA	3600433..3600648 (+)	216	WP_003178084.1	S4 domain-containing protein YaaA	-
S100141_RS19015 (S100141_03847)	recF	3600665..3601777 (+)	1113	WP_016885621.1	DNA replication/repair protein RecF	Machinery gene
S100141_RS19020	remB	3601795..3602037 (+)	243	WP_003178090.1	extracellular matrix regulator RemB	-
S100141_RS19025 (S100141_03848)	gyrB	3602097..3604010 (+)	1914	WP_009330043.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
S100141_RS19030 (S100141_03849)	gyrA	3604201..3606669 (+)	2469	WP_003178095.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42482.33 Da
• Isoelectric Point: 6.7331

>NTDB_id=232393 S100141_RS19015 WP_016885621.1 3600665..3601777(+) (recF) [Bacillus licheniformis strain SRCM100141]
MYIQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide

• Length: 1113 bp

>NTDB_id=232393 S100141_RS19015 WP_016885621.1 3600665..3601777(+) (recF) [Bacillus licheniformis strain SRCM100141]
TTGTATATCCAAAATATTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	88.859	99.459	0.884