Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   S100141_RS10545 Genome accession   NZ_CP021669
Coordinates   1950002..1950772 (-) Length   256 a.a.
NCBI ID   WP_003183624.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM100141     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1945002..1955772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100141_RS10525 (S100141_02127) - 1945077..1945889 (-) 813 WP_003183615.1 pyruvate, water dikinase regulatory protein -
  S100141_RS10530 (S100141_02128) - 1945915..1946553 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  S100141_RS10535 (S100141_02129) glyS 1946751..1948790 (-) 2040 WP_003183618.1 glycine--tRNA ligase subunit beta -
  S100141_RS10540 (S100141_02130) glyQ 1948783..1949670 (-) 888 WP_003183621.1 glycine--tRNA ligase subunit alpha -
  S100141_RS10545 (S100141_02131) recO 1950002..1950772 (-) 771 WP_003183624.1 DNA repair protein RecO Machinery gene
  S100141_RS10550 (S100141_02132) - 1950810..1950953 (-) 144 WP_003183626.1 YqzL family protein -
  S100141_RS10555 (S100141_02133) era 1951115..1952020 (-) 906 WP_080626947.1 GTPase Era -
  S100141_RS10560 (S100141_02134) - 1952001..1952411 (-) 411 WP_017474320.1 cytidine deaminase -
  S100141_RS10565 (S100141_02135) - 1952543..1952923 (-) 381 WP_003183633.1 diacylglycerol kinase family protein -
  S100141_RS10570 (S100141_02136) ybeY 1952901..1953377 (-) 477 WP_061578532.1 rRNA maturation RNase YbeY -
  S100141_RS10575 (S100141_02137) - 1953374..1955428 (-) 2055 WP_225315881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29473.12 Da        Isoelectric Point: 8.5644

>NTDB_id=232365 S100141_RS10545 WP_003183624.1 1950002..1950772(-) (recO) [Bacillus licheniformis strain SRCM100141]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRN
IREDLFLTAYAAYIAELIDKGTEEKKPNPFLFELLLQSMRRLNDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=232365 S100141_RS10545 WP_003183624.1 1950002..1950772(-) (recO) [Bacillus licheniformis strain SRCM100141]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAGATCATTACGCTATTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCATCTTTTTTATTCCGCAAATCATCCGGCCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGAAT
ATCCGCGAGGATCTGTTTTTAACAGCTTACGCGGCCTACATCGCTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTGCTTCAGTCAATGAGGAGGCTGAATGACGGTACAGATCCCGACATTATCGCCAACC
TCATCGAAGTCAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTGCACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGACTGTTTTTTTATTTTGACCTGTCAAGGCTCGGAAATGTCTCGGTCAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTTATTCAGACGTACTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

78.125

100

0.781

Multiple sequence alignment