Detailed information NTG0232345

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6N25_RS00355
• Genome accession: NZ_CP027340
• Coordinates: 62335..63327 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2015C-3121
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 57335..68327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N25_RS00330	ygbN	57990..59354 (+)	1365	WP_000104439.1	GntP family transporter	-
C6N25_RS00335	-	59393..59629 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6N25_RS00340	-	59640..61067 (-)	1428	WP_000863193.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6N25_RS00345	-	61067..61660 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6N25_RS00350	-	61807..62214 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6N25_RS00355	rpoS	62335..63327 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6N25_RS00360	nlpD	63390..64484 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6N25_RS00365	pcm	64669..65295 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6N25_RS00370	surE	65289..66050 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6N25_RS00375	truD	66031..67080 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6N25_RS00380	ispF	67077..67556 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6N25_RS00385	ispD	67556..68266 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232345 C6N25_RS00355 WP_000081550.1 62335..63327(-) (rpoS) [Escherichia coli strain 2015C-3121]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232345 C6N25_RS00355 WP_000081550.1 62335..63327(-) (rpoS) [Escherichia coli strain 2015C-3121]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715