Detailed information NTG0232294

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6N28_RS15920
• Genome accession: NZ_CP027338
• Coordinates: 2842731..2843723 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-3051
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2837731..2848723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N28_RS15895	ygbN	2838386..2839750 (+)	1365	WP_000104439.1	GntP family transporter	-
C6N28_RS15900	-	2839789..2840025 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6N28_RS15905	-	2840036..2841463 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6N28_RS15910	-	2841463..2842056 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6N28_RS15915	-	2842203..2842610 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6N28_RS15920	rpoS	2842731..2843723 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6N28_RS15925	nlpD	2843786..2844880 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6N28_RS15930	pcm	2845065..2845691 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6N28_RS15935	surE	2845685..2846446 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6N28_RS15940	truD	2846427..2847476 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C6N28_RS15945	ispF	2847473..2847952 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6N28_RS15950	ispD	2847952..2848662 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232294 C6N28_RS15920 WP_000081550.1 2842731..2843723(-) (rpoS) [Escherichia coli strain 2014C-3051]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232294 C6N28_RS15920 WP_000081550.1 2842731..2843723(-) (rpoS) [Escherichia coli strain 2014C-3051]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715