Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6N28_RS15610 Genome accession   NZ_CP027338
Coordinates   2785590..2786105 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3051     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2780590..2791105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N28_RS15585 ygaZ 2780989..2781726 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C6N28_RS15590 ygaH 2781716..2782051 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6N28_RS15595 emrR 2782142..2782672 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6N28_RS15600 emrA 2782799..2783971 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6N28_RS15605 emrB 2783988..2785526 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6N28_RS15610 luxS 2785590..2786105 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  C6N28_RS15615 gshA 2786255..2787811 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6N28_RS15620 yqaA 2787884..2788312 (-) 429 WP_001287457.1 YqaA family protein -
  C6N28_RS15625 yqaB 2788309..2788875 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6N28_RS15660 csrA 2790341..2790526 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=232291 C6N28_RS15610 WP_001130207.1 2785590..2786105(-) (luxS) [Escherichia coli strain 2014C-3051]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232291 C6N28_RS15610 WP_001130207.1 2785590..2786105(-) (luxS) [Escherichia coli strain 2014C-3051]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731