Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CCX87_RS17500 Genome accession   NZ_CP021648
Coordinates   3767093..3768682 (-) Length   529 a.a.
NCBI ID   WP_087747873.1    Uniprot ID   -
Organism   Acidovorax sp. T1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3762093..3773682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX87_RS17470 - 3762650..3763123 (+) 474 WP_198314809.1 phosphatidylglycerophosphatase A -
  CCX87_RS17475 - 3763189..3763644 (+) 456 WP_087747868.1 CinA family protein -
  CCX87_RS17480 - 3763737..3764594 (-) 858 WP_087747869.1 UPF0149 family protein -
  CCX87_RS17485 - 3764696..3765238 (-) 543 WP_087747870.1 putative toxin-antitoxin system toxin component, PIN family -
  CCX87_RS17490 - 3765228..3766532 (-) 1305 WP_087747871.1 THUMP domain-containing protein -
  CCX87_RS17495 - 3766529..3767011 (-) 483 WP_087747872.1 thioesterase family protein -
  CCX87_RS17500 rpoN/rpoN1 3767093..3768682 (-) 1590 WP_087747873.1 RNA polymerase factor sigma-54 Machinery gene
  CCX87_RS17505 lptB 3768682..3769455 (-) 774 WP_232476435.1 LPS export ABC transporter ATP-binding protein -
  CCX87_RS17510 lptA 3769467..3770120 (-) 654 WP_087747875.1 lipopolysaccharide transport periplasmic protein LptA -
  CCX87_RS17515 - 3770223..3770879 (-) 657 WP_087747876.1 thiol:disulfide interchange protein DsbA/DsbL -
  CCX87_RS17520 - 3770964..3771650 (-) 687 WP_087747877.1 SPOR domain-containing protein -
  CCX87_RS17525 argS 3771663..3773360 (-) 1698 WP_087747878.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58107.17 Da        Isoelectric Point: 4.8175

>NTDB_id=232258 CCX87_RS17500 WP_087747873.1 3767093..3768682(-) (rpoN/rpoN1) [Acidovorax sp. T1]
MKPGLSLRVSQHLSLTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAPREEFGLEAADTPAQADDYSADDAMY
SGAASASSTSAEGQNDAETPSTSADEPDWSGDGTVEMAPNDAEWGGDAPARNRNDSEGDEADATELARSHESLTSFLHRQ
ALALRLSEIDRAALRFLIESLNDDGYLEEPLQELATGLAGEGNLEQIDELVHRFTVAQRLLQSLEPVGVGARNLAECLTL
QLKALAADEDSGIDPGTVQTALSICQQPLEMLARRDIRRLTQACGDGEERTRAAMALIARLEPRPGRRFADVERNIIVPD
VIVRKAGRANGHSGQHNFIVQLNPDVMPRLRVHDIYAGALRGHKGGEGHQGMQQRLQEARWFIKNIQQRFDTILRVSRAI
VERQKNFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNASSTAVRALIKQF
VAAENPAKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=232258 CCX87_RS17500 WP_087747873.1 3767093..3768682(-) (rpoN/rpoN1) [Acidovorax sp. T1]
ATGAAACCCGGCCTGTCTCTGCGCGTTTCGCAGCACCTGTCGCTCACGCCGCAGTTGCAACAATCCATCCGGCTGTTGCA
GCTGTCCACACTCGAACTCTCGCAGGAAGTCGAGCAGATGCTTGACGAGAACCCGTTTCTGGAGCGCACCGCCGAAGAGG
CGCCGCGCGAGGAGTTCGGCCTGGAAGCCGCCGACACCCCCGCGCAGGCCGACGACTACAGCGCCGATGATGCTATGTAT
TCAGGAGCTGCCAGCGCAAGCAGCACTAGCGCTGAAGGCCAAAATGATGCGGAAACCCCCAGCACCAGCGCGGACGAACC
CGACTGGAGCGGCGACGGCACCGTGGAAATGGCGCCCAACGATGCCGAGTGGGGCGGTGATGCGCCCGCCCGCAACCGCA
ACGACTCCGAAGGCGACGAGGCCGATGCCACCGAGCTGGCGCGCTCGCACGAGTCCCTCACGTCGTTTCTGCACCGCCAG
GCCCTGGCGCTGCGCCTGTCCGAGATCGACCGCGCCGCGCTGCGCTTCCTGATTGAATCGCTCAACGACGACGGCTACCT
TGAAGAGCCGCTCCAAGAGCTGGCCACGGGCCTGGCTGGTGAGGGCAATCTCGAGCAGATCGACGAGCTGGTGCACCGTT
TCACCGTGGCGCAGCGCCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCAACCTGGCCGAATGCCTGACGCTG
CAGCTCAAGGCCCTGGCCGCCGACGAAGACAGCGGGATCGACCCCGGCACCGTGCAGACCGCCCTCTCCATCTGCCAGCA
GCCGCTGGAGATGCTGGCGCGCCGCGACATCCGCCGCCTCACCCAGGCCTGTGGCGATGGCGAAGAGCGCACGCGCGCCG
CCATGGCCCTGATTGCCCGGCTGGAGCCACGCCCCGGCCGCCGCTTTGCCGATGTGGAGCGCAACATCATCGTGCCCGAC
GTCATCGTGCGCAAAGCCGGCCGCGCCAATGGGCACAGCGGCCAGCACAACTTCATCGTGCAGCTCAACCCCGACGTGAT
GCCGCGCCTGCGTGTGCACGACATCTACGCCGGCGCGCTGCGCGGCCACAAGGGCGGCGAGGGCCACCAGGGCATGCAGC
AGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATCCTGCGCGTCTCGCGCGCCATC
GTCGAGCGGCAGAAAAACTTTTTCACCCACGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGACATCGCCGATGAGCT
GGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGATCGGCACCTATGAGCTCAAAT
ACTTCTTTGGCTCGGGCCTGGGCACCGAGACCGGCGGCAACGCCTCCAGCACGGCGGTGCGTGCGCTGATCAAGCAGTTC
GTCGCCGCTGAAAACCCCGCCAAGCCGCTGTCCGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATCGAGTGCGC
GCGCCGCACCGTGGCCAAATACCGCGAGGCGCTCAAGATCGCGCCGGCCAACCTGCGCAAGGCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-356)

Sigma-54, DNA binding domain (Sigma54_DBD)

(372-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.271

100

0.539

Multiple sequence alignment