Detailed information NTG0232255

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: CCX87_RS14310
• Genome accession: NZ_CP021648
• Coordinates: 3063578..3064942 (+)
• Length: 454 a.a.
• NCBI ID: WP_157667137.1
• Uniprot ID: -
• Organism: Acidovorax sp. T1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3058578..3069942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CCX87_RS14290	coaD	3059235..3059735 (-)	501	WP_087747317.1	pantetheine-phosphate adenylyltransferase	-
CCX87_RS14295	rsmD	3059959..3060675 (-)	717	WP_087747321.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
CCX87_RS14300	-	3060672..3062045 (-)	1374	WP_087747323.1	pitrilysin family protein	-
CCX87_RS14305	-	3062068..3063549 (-)	1482	WP_087747325.1	pitrilysin family protein	-
CCX87_RS14310	pilA	3063578..3064942 (+)	1365	WP_157667137.1	signal recognition particle-docking protein FtsY	Machinery gene
CCX87_RS14315	rpoH	3065243..3066184 (+)	942	WP_087747327.1	RNA polymerase sigma factor RpoH	-
CCX87_RS14320	-	3066315..3067319 (+)	1005	WP_087747329.1	tripartite tricarboxylate transporter substrate binding protein	-
CCX87_RS14325	-	3067374..3067985 (-)	612	WP_198314714.1	SCO family protein	-
CCX87_RS14330	cyoE	3067991..3068887 (-)	897	WP_087747332.1	heme o synthase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 46690.75 Da
• Isoelectric Point: 6.1701

>NTDB_id=232255 CCX87_RS14310 WP_157667137.1 3063578..3064942(+) (pilA) [Acidovorax sp. T1]
MFSFFKKKAPPTPAPPAAAAPATPAVPDVPPAPPAAIAPAEQATAAPPPWPEPAAATAPPRAPTTPTTPTPPPAASGGFG
WLRNPFAAKPPAPAPEAAPVVVPPPAAAPVSAPVSAPEPTPTPPVVVVAKPIAVAAPPASAAQAPTPATELPPPAERTGW
LNRLKAGLRKTGSSIATVFTGTQIDDALYEELEEALLMADTGVKATQWLLTDLRRRVKETKTTDPAAVKGLLADALADLL
RPLEKALVIGEHTPTVIMVAGVNGAGKTTSIGKLTKHLANEGASVLLAAADTFRAAAREQLGVWADRNLVEIVSQEGGDP
AAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMEELKKIRRVVTKADASAPHEVLLVIDGNTGQNALAQVRSFDDALQL
TGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKLEDLETFNAREFAQALLT

Nucleotide

• Length: 1365 bp

>NTDB_id=232255 CCX87_RS14310 WP_157667137.1 3063578..3064942(+) (pilA) [Acidovorax sp. T1]
ATGTTCAGTTTTTTCAAGAAAAAAGCCCCCCCCACGCCCGCACCACCCGCTGCGGCTGCGCCTGCAACCCCTGCTGTGCC
GGATGTTCCGCCCGCGCCACCGGCCGCAATAGCGCCCGCCGAGCAGGCAACTGCCGCGCCGCCGCCATGGCCCGAGCCCG
CCGCGGCCACCGCGCCGCCACGGGCCCCCACGACCCCCACGACCCCCACGCCCCCACCGGCGGCCAGCGGTGGCTTTGGC
TGGCTGCGCAACCCCTTTGCAGCCAAGCCGCCCGCGCCTGCCCCTGAAGCGGCCCCGGTGGTTGTGCCACCACCGGCCGC
GGCGCCGGTGTCTGCGCCGGTATCTGCGCCTGAACCGACGCCCACACCGCCCGTGGTGGTCGTGGCGAAGCCCATCGCCG
TTGCAGCCCCGCCCGCGTCGGCGGCCCAGGCCCCCACACCGGCAACAGAACTGCCCCCGCCCGCCGAACGCACCGGCTGG
CTCAACCGCCTCAAGGCGGGCTTGCGCAAGACGGGTTCGAGCATCGCCACCGTTTTCACCGGCACCCAGATCGACGATGC
GCTGTATGAAGAGCTGGAAGAGGCCCTCTTGATGGCCGACACCGGCGTCAAGGCCACGCAGTGGCTGCTGACCGACCTCC
GGCGCCGCGTCAAGGAAACCAAGACCACCGACCCCGCCGCCGTCAAAGGGCTGCTGGCCGATGCATTGGCCGACCTGCTG
CGCCCGCTGGAGAAAGCACTGGTCATCGGCGAACACACCCCCACCGTGATCATGGTGGCGGGCGTCAACGGCGCGGGCAA
GACCACCTCGATCGGCAAGCTCACCAAGCACCTGGCCAACGAAGGGGCCAGCGTGCTGCTGGCGGCCGCCGACACCTTCC
GCGCCGCTGCGCGCGAACAACTGGGCGTATGGGCCGACCGCAACCTGGTCGAGATCGTCAGCCAGGAAGGCGGCGACCCC
GCCGCCGTGAGCTTTGACGCCGTCACCGCCGGCAAGGCGCGCGGCAAGGACGTGGTGCTGGTGGACACCGCCGGGCGCCT
GCCCACGCAACTGCACCTGATGGAAGAGCTGAAGAAAATCCGCCGCGTGGTCACCAAGGCCGACGCCAGCGCGCCGCACG
AGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTGCGCTCGTTTGACGATGCGCTGCAACTC
ACCGGCCTCATCGTGACCAAACTCGATGGCACGGCCAAGGGCGGCGTGCTGGCGGCCATTGCGCAGGAACGGCCGATTCC
GGTTTACTTCATCGGCGTGGGCGAAAAGCTCGAAGACCTCGAAACCTTCAACGCACGCGAATTTGCGCAGGCCCTGCTGA
CCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (173-236)

• SRP54-type protein, GTPase domain (SRP54) (254-453)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	47.712	100	0.482