Detailed information NTG0232215

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MJ63_RS14795
• Genome accession: NZ_CP027331
• Coordinates: 2684150..2685142 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-3277
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2679150..2690142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MJ63_RS14755	ygbM	2679162..2679938 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
MJ63_RS14760	ygbN	2680027..2681391 (+)	1365	WP_000104439.1	GntP family transporter	-
MJ63_RS14765	-	2681430..2681666 (-)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
MJ63_RS14770	-	2681677..2681931 (-)	255	Protein_2739	hypothetical protein	-
MJ63_RS14780	-	2682020..2682385 (+)	366	WP_032345630.1	hypothetical protein	-
MJ63_RS14785	-	2682385..2683572 (+)	1188	WP_000937595.1	IS91 family transposase	-
MJ63_RS14790	-	2683760..2684029 (+)	270	Protein_2742	MarR family transcriptional regulator	-
MJ63_RS14795	rpoS	2684150..2685142 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MJ63_RS14800	nlpD	2685205..2686299 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
MJ63_RS14805	pcm	2686484..2687110 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
MJ63_RS14810	surE	2687104..2687865 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MJ63_RS14815	truD	2687846..2688895 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
MJ63_RS14820	ispF	2688892..2689371 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MJ63_RS14825	ispD	2689371..2690081 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232215 MJ63_RS14795 WP_000081550.1 2684150..2685142(-) (rpoS) [Escherichia coli strain 2013C-3277]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232215 MJ63_RS14795 WP_000081550.1 2684150..2685142(-) (rpoS) [Escherichia coli strain 2013C-3277]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715