Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MJ63_RS14480 Genome accession   NZ_CP027331
Coordinates   2627362..2627877 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3277     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2622362..2632877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ63_RS14455 ygaZ 2622759..2623498 (+) 740 Protein_2680 L-valine exporter subunit YgaZ -
  MJ63_RS14460 ygaH 2623488..2623823 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  MJ63_RS14465 emrR 2623914..2624444 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  MJ63_RS14470 emrA 2624571..2625743 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  MJ63_RS14475 emrB 2625760..2627298 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  MJ63_RS14480 luxS 2627362..2627877 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  MJ63_RS14485 gshA 2628027..2629583 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  MJ63_RS14490 yqaA 2629656..2630084 (-) 429 WP_001287457.1 YqaA family protein -
  MJ63_RS14495 yqaB 2630081..2630647 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  MJ63_RS14525 csrA 2631972..2632157 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=232212 MJ63_RS14480 WP_001130207.1 2627362..2627877(-) (luxS) [Escherichia coli strain 2013C-3277]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232212 MJ63_RS14480 WP_001130207.1 2627362..2627877(-) (luxS) [Escherichia coli strain 2013C-3277]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment