Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MJ63_RS10160 Genome accession   NZ_CP027331
Coordinates   1803640..1805067 (+) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3277     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1798640..1810067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ63_RS31695 - 1798809..1799180 (+) 372 WP_001295631.1 IS110 family transposase -
  MJ63_RS31700 - 1799451..1799816 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  MJ63_RS10140 tmaR 1799917..1800246 (-) 330 WP_000450409.1 DUF496 family protein -
  MJ63_RS10145 yeeA 1800418..1801476 (-) 1059 WP_001200887.1 FUSC family protein -
  MJ63_RS10150 sbmC 1801674..1802147 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  MJ63_RS10155 dacD 1802265..1803431 (-) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MJ63_RS10160 sbcB 1803640..1805067 (+) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  MJ63_RS10165 tsuB 1805110..1805337 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MJ63_RS10170 tsuA 1805351..1806409 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  MJ63_RS10175 plaP 1806588..1807946 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MJ63_RS10180 yoeI 1807936..1807998 (-) 63 WP_010723108.1 membrane protein YoeI -
  MJ63_RS10185 yeeY 1808213..1809142 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MJ63_RS10190 yeeZ 1809188..1810012 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=232203 MJ63_RS10160 WP_000980546.1 1803640..1805067(+) (sbcB) [Escherichia coli strain 2013C-3277]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=232203 MJ63_RS10160 WP_000980546.1 1803640..1805067(+) (sbcB) [Escherichia coli strain 2013C-3277]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment