Detailed information NTG0232184

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6N65_RS27090
• Genome accession: NZ_CP027325
• Coordinates: 5078137..5079129 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-4830
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5073137..5084129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N65_RS27065	ygbN	5073791..5075155 (+)	1365	WP_000104429.1	GntP family transporter	-
C6N65_RS27070	-	5075123..5075431 (-)	309	WP_236922484.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6N65_RS27075	-	5075442..5076869 (-)	1428	Protein_4991	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6N65_RS27080	-	5076869..5077462 (-)	594	WP_032207599.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6N65_RS27085	-	5077609..5078016 (+)	408	WP_032207601.1	MarR family transcriptional regulator	-
C6N65_RS27090	rpoS	5078137..5079129 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6N65_RS27095	nlpD	5079192..5080286 (-)	1095	WP_306172454.1	murein hydrolase activator NlpD	-
C6N65_RS27100	pcm	5080471..5081097 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6N65_RS27105	surE	5081091..5081852 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6N65_RS27110	truD	5081833..5082882 (-)	1050	WP_032207604.1	tRNA pseudouridine(13) synthase TruD	-
C6N65_RS27115	ispF	5082879..5083358 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6N65_RS27120	ispD	5083358..5084068 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232184 C6N65_RS27090 WP_000081550.1 5078137..5079129(-) (rpoS) [Escherichia coli strain 2013C-4830]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232184 C6N65_RS27090 WP_000081550.1 5078137..5079129(-) (rpoS) [Escherichia coli strain 2013C-4830]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715