Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B4U42_RS12020 Genome accession   NZ_CP021644
Coordinates   2312598..2313236 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis 29755     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2307598..2318236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U42_RS11975 (B4U42_11830) rplP 2307631..2308041 (-) 411 WP_005711177.1 50S ribosomal protein L16 -
  B4U42_RS11980 (B4U42_11835) rpsC 2308054..2308758 (-) 705 WP_005711175.1 30S ribosomal protein S3 -
  B4U42_RS11985 (B4U42_11840) rplV 2308776..2309108 (-) 333 WP_005706427.1 50S ribosomal protein L22 -
  B4U42_RS11990 (B4U42_11845) rpsS 2309119..2309394 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  B4U42_RS11995 (B4U42_11850) rplB 2309422..2310243 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  B4U42_RS12000 (B4U42_11855) rplW 2310264..2310569 (-) 306 WP_005711171.1 50S ribosomal protein L23 -
  B4U42_RS12005 (B4U42_11860) rplD 2310566..2311168 (-) 603 WP_005711169.1 50S ribosomal protein L4 -
  B4U42_RS12010 (B4U42_11865) rplC 2311184..2311810 (-) 627 WP_005711168.1 50S ribosomal protein L3 -
  B4U42_RS12015 (B4U42_11870) rpsJ 2311827..2312138 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  B4U42_RS12020 (B4U42_11875) sxy/tfoX 2312598..2313236 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  B4U42_RS12025 (B4U42_11880) fumC 2313383..2314777 (+) 1395 WP_005711166.1 class II fumarate hydratase -
  B4U42_RS12030 (B4U42_11885) - 2314959..2316137 (+) 1179 WP_005711165.1 ATP-grasp domain-containing protein -
  B4U42_RS12035 (B4U42_11890) - 2316272..2317030 (+) 759 WP_005711160.1 alpha/beta hydrolase-fold protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=232181 B4U42_RS12020 WP_005711167.1 2312598..2313236(+) (sxy/tfoX) [Glaesserella parasuis 29755]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=232181 B4U42_RS12020 WP_005711167.1 2312598..2313236(+) (sxy/tfoX) [Glaesserella parasuis 29755]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment