Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6N65_RS26780 Genome accession   NZ_CP027325
Coordinates   5022373..5022888 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2013C-4830     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5017373..5027888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N65_RS26755 ygaZ 5017772..5018509 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  C6N65_RS26760 ygaH 5018499..5018834 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6N65_RS26765 emrR 5018925..5019455 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6N65_RS26770 emrA 5019582..5020754 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6N65_RS26775 emrB 5020771..5022309 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6N65_RS26780 luxS 5022373..5022888 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6N65_RS26785 gshA 5023039..5024595 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6N65_RS26790 yqaA 5024668..5025096 (-) 429 WP_001287457.1 YqaA family protein -
  C6N65_RS26795 yqaB 5025093..5025659 (-) 567 WP_032207565.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6N65_RS26825 csrA 5027117..5027302 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=232181 C6N65_RS26780 WP_001130211.1 5022373..5022888(-) (luxS) [Escherichia coli strain 2013C-4830]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232181 C6N65_RS26780 WP_001130211.1 5022373..5022888(-) (luxS) [Escherichia coli strain 2013C-4830]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment