Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | B4U42_RS08770 | Genome accession | NZ_CP021644 |
| Coordinates | 1676260..1676781 (-) | Length | 173 a.a. |
| NCBI ID | WP_005712507.1 | Uniprot ID | A0A836ME07 |
| Organism | Glaesserella parasuis 29755 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1671260..1681781
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4U42_RS08735 (B4U42_08590) | - | 1671502..1672131 (-) | 630 | WP_005712495.1 | LysE family transporter | - |
| B4U42_RS08740 (B4U42_08595) | - | 1672133..1672603 (-) | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| B4U42_RS08745 (B4U42_08600) | thiL | 1672606..1673574 (-) | 969 | WP_005712499.1 | thiamine-phosphate kinase | - |
| B4U42_RS08750 (B4U42_08605) | nusB | 1673583..1673996 (-) | 414 | WP_005712500.1 | transcription antitermination factor NusB | - |
| B4U42_RS08755 (B4U42_08610) | comE | 1674075..1675337 (-) | 1263 | WP_005712502.1 | type IV pilus secretin PilQ | Machinery gene |
| B4U42_RS08760 (B4U42_08615) | comD | 1675347..1675688 (-) | 342 | WP_235685072.1 | hypothetical protein | Machinery gene |
| B4U42_RS08765 (B4U42_08620) | comC | 1675733..1676263 (-) | 531 | WP_005712505.1 | hypothetical protein | Machinery gene |
| B4U42_RS08770 (B4U42_08625) | comB | 1676260..1676781 (-) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| B4U42_RS08775 (B4U42_08630) | comA | 1676757..1677434 (-) | 678 | WP_005712510.1 | hypothetical protein | Machinery gene |
| B4U42_RS08780 (B4U42_08635) | - | 1677588..1680143 (+) | 2556 | WP_005712512.1 | penicillin-binding protein 1A | - |
| B4U42_RS08785 (B4U42_08640) | aroK | 1680373..1680894 (+) | 522 | WP_005712514.1 | shikimate kinase AroK | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 20324.01 Da Isoelectric Point: 7.3557
>NTDB_id=232169 B4U42_RS08770 WP_005712507.1 1676260..1676781(-) (comB) [Glaesserella parasuis 29755]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE
Nucleotide
Download Length: 522 bp
>NTDB_id=232169 B4U42_RS08770 WP_005712507.1 1676260..1676781(-) (comB) [Glaesserella parasuis 29755]
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Glaesserella parasuis strain SC1401 |
97.11 |
100 |
0.971 |