Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   B4U42_RS08760 Genome accession   NZ_CP021644
Coordinates   1675347..1675688 (-) Length   113 a.a.
NCBI ID   WP_235685072.1    Uniprot ID   -
Organism   Glaesserella parasuis 29755     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670347..1680688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U42_RS08730 (B4U42_08585) trxA 1670891..1671205 (-) 315 WP_005712493.1 thioredoxin -
  B4U42_RS08735 (B4U42_08590) - 1671502..1672131 (-) 630 WP_005712495.1 LysE family transporter -
  B4U42_RS08740 (B4U42_08595) - 1672133..1672603 (-) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  B4U42_RS08745 (B4U42_08600) thiL 1672606..1673574 (-) 969 WP_005712499.1 thiamine-phosphate kinase -
  B4U42_RS08750 (B4U42_08605) nusB 1673583..1673996 (-) 414 WP_005712500.1 transcription antitermination factor NusB -
  B4U42_RS08755 (B4U42_08610) comE 1674075..1675337 (-) 1263 WP_005712502.1 type IV pilus secretin PilQ Machinery gene
  B4U42_RS08760 (B4U42_08615) comD 1675347..1675688 (-) 342 WP_235685072.1 hypothetical protein Machinery gene
  B4U42_RS08765 (B4U42_08620) comC 1675733..1676263 (-) 531 WP_005712505.1 hypothetical protein Machinery gene
  B4U42_RS08770 (B4U42_08625) comB 1676260..1676781 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  B4U42_RS08775 (B4U42_08630) comA 1676757..1677434 (-) 678 WP_005712510.1 hypothetical protein Machinery gene
  B4U42_RS08780 (B4U42_08635) - 1677588..1680143 (+) 2556 WP_005712512.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13178.89 Da        Isoelectric Point: 4.6931

>NTDB_id=232167 B4U42_RS08760 WP_235685072.1 1675347..1675688(-) (comD) [Glaesserella parasuis 29755]
MADPFYAKENAQDQPQTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDKKQLIDLYPDDYLSHS
FIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=232167 B4U42_RS08760 WP_235685072.1 1675347..1675688(-) (comD) [Glaesserella parasuis 29755]
ATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCAAGATCAGCCACAAACGGCAAAAGATCAAAACAAAACGACCGCTTG
TACGCCAACAGAGAAGGTGAACGAAATTCACCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ACGATAAAATTCGAGCGATTTTTATAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAGATTGATTTTAAATCGGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

93.805

100

0.938

Multiple sequence alignment