Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CCS77_RS02630 Genome accession   NZ_CP021642
Coordinates   523418..524371 (-) Length   317 a.a.
NCBI ID   WP_107916477.1    Uniprot ID   A0A2R4NYT5
Organism   Campylobacter concisus strain P2CDO4     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 518418..529371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCS77_RS02620 (CCS77_0526) dnaE 519048..522659 (+) 3612 WP_107916476.1 DNA polymerase III subunit alpha -
  CCS77_RS10460 (CCS77_0527) - 522675..522932 (+) 258 WP_201741724.1 DUF6882 domain-containing protein -
  CCS77_RS02625 (CCS77_0528) - 522871..523383 (+) 513 WP_201741725.1 DUF6882 domain-containing protein -
  CCS77_RS02630 (CCS77_0529) waaF 523418..524371 (-) 954 WP_107916477.1 lipopolysaccharide heptosyltransferase II Regulator
  CCS77_RS02635 (CCS77_0530) - 524368..525399 (-) 1032 WP_107916478.1 glycosyltransferase family 4 protein -
  CCS77_RS02640 (CCS77_0531) - 525531..526466 (+) 936 WP_107916479.1 glycosyltransferase family 9 protein -
  CCS77_RS02645 (CCS77_0532) - 526429..527748 (+) 1320 WP_107916480.1 O-antigen ligase family protein -
  CCS77_RS02650 (CCS77_0533) - 527726..528763 (+) 1038 WP_107916481.1 glycosyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35479.61 Da        Isoelectric Point: 9.6102

>NTDB_id=232148 CCS77_RS02630 WP_107916477.1 523418..524371(-) (waaF) [Campylobacter concisus strain P2CDO4]
MRVFIELPTWLGDSVMASAAIENLVQNEKNLQIVFFGSFVACELYKSHPNCEKVVVDESKKAKFRFLSLAKSAKSLGKFD
LALSFRSSFASKFLLFFIDAKKKAIFKKSKTVLHQVLKYANFVKNALGLSEISTQLKLHFTPQISTKKTLALNPGASYGS
AKRWYPEYFAQVALNFKDEFEIVIFGGKGEQEICEKIEQILKENGAACQNLAGKTSVKELCERIAGLSKNGIFVTNDSGP
MHVAAAFHIPTIALFGPTKFSETSPWGNEFAKIVHLNLACMPCMKRVCPLKTHACMKELKPQMVIDEINLLRKELDY

Nucleotide


Download         Length: 954 bp        

>NTDB_id=232148 CCS77_RS02630 WP_107916477.1 523418..524371(-) (waaF) [Campylobacter concisus strain P2CDO4]
ATGAGAGTTTTTATCGAGCTTCCAACCTGGCTAGGTGATAGCGTGATGGCAAGCGCTGCGATCGAAAATTTGGTGCAAAA
TGAGAAGAATTTACAAATCGTTTTTTTTGGCTCATTTGTAGCTTGCGAGCTTTACAAAAGCCATCCAAACTGCGAAAAAG
TGGTCGTTGATGAGAGCAAAAAGGCTAAATTTAGATTTTTATCACTTGCAAAAAGTGCTAAAAGTCTTGGCAAATTTGAT
CTAGCACTTAGCTTTAGAAGCTCGTTTGCTAGCAAATTTTTACTCTTTTTTATAGACGCTAAGAAAAAAGCCATCTTTAA
AAAGAGCAAAACCGTCCTTCATCAGGTGCTAAAATATGCAAATTTTGTAAAAAATGCCCTAGGCCTAAGCGAAATTTCTA
CTCAGCTAAAGCTGCATTTTACACCTCAAATTTCAACCAAAAAAACACTAGCTCTAAATCCAGGTGCGAGCTATGGAAGT
GCGAAAAGATGGTATCCAGAGTACTTTGCGCAGGTGGCTTTAAATTTTAAAGATGAGTTTGAGATCGTTATCTTTGGTGG
CAAAGGCGAGCAAGAAATTTGTGAAAAAATAGAGCAAATTTTAAAAGAAAACGGCGCAGCCTGCCAAAATTTAGCTGGCA
AAACCAGTGTCAAAGAGCTTTGTGAGCGCATAGCTGGGCTTAGCAAAAATGGCATTTTCGTCACAAACGATAGCGGCCCT
ATGCACGTAGCTGCCGCTTTTCATATACCAACGATCGCTCTTTTTGGACCGACAAAATTTAGCGAAACCTCGCCCTGGGG
CAATGAATTTGCAAAGATAGTGCATCTAAATTTAGCTTGCATGCCCTGTATGAAGCGAGTTTGCCCGCTAAAAACGCATG
CTTGCATGAAAGAGCTAAAGCCACAAATGGTGATAGATGAGATAAATTTACTAAGAAAAGAGCTAGATTATTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(111-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4NYT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.155

100

0.511

Multiple sequence alignment