Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CCX85_RS08645 Genome accession   NZ_CP021640
Coordinates   1727096..1727809 (+) Length   237 a.a.
NCBI ID   WP_002992823.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain JS12     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722096..1732809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX85_RS08635 (CCX85_08625) treC 1723165..1724793 (-) 1629 WP_101248486.1 alpha,alpha-phosphotrehalase -
  CCX85_RS08640 (CCX85_08630) treP 1724861..1726885 (-) 2025 WP_101248487.1 PTS system trehalose-specific EIIBC component -
  CCX85_RS08645 (CCX85_08635) treR 1727096..1727809 (+) 714 WP_002992823.1 trehalose operon repressor Regulator
  CCX85_RS08655 (CCX85_08645) - 1728089..1728427 (-) 339 Protein_1608 winged helix-turn-helix transcriptional regulator -
  CCX85_RS08660 (CCX85_08650) - 1728613..1729470 (+) 858 WP_038432671.1 VOC family protein -
  CCX85_RS08665 (CCX85_08655) yaaA 1729512..1730243 (+) 732 WP_002982222.1 peroxide stress protein YaaA -
  CCX85_RS08670 (CCX85_08660) nrdG 1730417..1731031 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  CCX85_RS08675 (CCX85_08665) - 1731031..1731540 (-) 510 WP_002991345.1 GNAT family N-acetyltransferase -
  CCX85_RS08680 (CCX85_08670) - 1731549..1732484 (-) 936 WP_002992828.1 Gfo/Idh/MocA family protein -
  CCX85_RS09255 (CCX85_08675) - 1732513..1732659 (-) 147 WP_002982210.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27620.79 Da        Isoelectric Point: 9.6307

>NTDB_id=232128 CCX85_RS08645 WP_002992823.1 1727096..1727809(+) (treR) [Streptococcus pyogenes strain JS12]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIRHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=232128 CCX85_RS08645 WP_002992823.1 1727096..1727809(+) (treR) [Streptococcus pyogenes strain JS12]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAATACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCACTTCTCACAAAGGCAG
GTCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAGACATCATCAGATCATGTTCCCTATCTCAGAACTAACT
AGTTATCAGGAACTCGTATCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACGCGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.376

98.734

0.675

Multiple sequence alignment