Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSPPH_RS08215 Genome accession   NC_005773
Coordinates   1889241..1889918 (+) Length   225 a.a.
NCBI ID   WP_004667789.1    Uniprot ID   A0A3M4II04
Organism   Pseudomonas savastanoi pv. phaseolicola 1448A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1884241..1894918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSPPH_RS08195 (PSPPH_1622) - 1884293..1884916 (+) 624 WP_011168130.1 glutathione S-transferase -
  PSPPH_RS08200 (PSPPH_1623) - 1885100..1886032 (+) 933 WP_005733932.1 ABC transporter ATP-binding protein -
  PSPPH_RS08205 (PSPPH_1624) - 1886029..1886817 (+) 789 WP_002552673.1 ABC transporter permease -
  PSPPH_RS08210 (PSPPH_1625) - 1886954..1889159 (+) 2206 Protein_1655 DNA internalization-related competence protein ComEC/Rec2 -
  PSPPH_RS08215 (PSPPH_1626) exbB 1889241..1889918 (+) 678 WP_004667789.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSPPH_RS08220 (PSPPH_1627) - 1889915..1890346 (+) 432 WP_002552677.1 ExbD/TolR family protein -
  PSPPH_RS08225 (PSPPH_1628) lpxK 1890346..1891341 (+) 996 WP_011168132.1 tetraacyldisaccharide 4'-kinase -
  PSPPH_RS08230 (PSPPH_1629) - 1891359..1891544 (+) 186 WP_002552679.1 Trm112 family protein -
  PSPPH_RS08235 (PSPPH_1630) kdsB 1891541..1892305 (+) 765 WP_004657844.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSPPH_RS08240 (PSPPH_1631) murB 1892340..1893359 (+) 1020 WP_004657846.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24242.55 Da        Isoelectric Point: 8.5280

>NTDB_id=23212 PSPPH_RS08215 WP_004667789.1 1889241..1889918(+) (exbB) [Pseudomonas savastanoi pv. phaseolicola 1448A]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=23212 PSPPH_RS08215 WP_004667789.1 1889241..1889918(+) (exbB) [Pseudomonas savastanoi pv. phaseolicola 1448A]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCTGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAGATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTACTCGCCAGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4II04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

93.333

0.733

Multiple sequence alignment