Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CCX85_RS01370 Genome accession   NZ_CP021640
Coordinates   252838..253908 (+) Length   356 a.a.
NCBI ID   WP_101248280.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain JS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 247838..258908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX85_RS01355 (CCX85_01355) amiA 248366..250336 (+) 1971 WP_002992224.1 peptide ABC transporter substrate-binding protein Regulator
  CCX85_RS01360 (CCX85_01360) amiC 250401..251903 (+) 1503 WP_002992227.1 ABC transporter permease Regulator
  CCX85_RS01365 (CCX85_01365) amiD 251903..252829 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  CCX85_RS01370 (CCX85_01370) amiE 252838..253908 (+) 1071 WP_101248280.1 ABC transporter ATP-binding protein Regulator
  CCX85_RS01375 (CCX85_01375) amiF 253901..254824 (+) 924 WP_002986000.1 ATP-binding cassette domain-containing protein Regulator
  CCX85_RS09505 - 254862..254951 (-) 90 WP_109821088.1 IS3 family transposase -
  CCX85_RS09175 (CCX85_01380) - 254972..255151 (-) 180 WP_014635282.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39690.78 Da        Isoelectric Point: 5.4774

>NTDB_id=232094 CCX85_RS01370 WP_101248280.1 252838..253908(+) (amiE) [Streptococcus pyogenes strain JS12]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSNAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYPPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=232094 CCX85_RS01370 WP_101248280.1 252838..253908(+) (amiE) [Streptococcus pyogenes strain JS12]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTAATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGAATCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATCCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.667

100

0.775
  amiE Streptococcus thermophilus LMG 18311

75.556

100

0.764
  amiE Streptococcus thermophilus LMD-9

75.556

100

0.764
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment