Detailed information NTG0232064

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6N24_RS15690
• Genome accession: NZ_CP027323
• Coordinates: 2927918..2928910 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-3033
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2922918..2933910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N24_RS15665	ygbN	2923573..2924937 (+)	1365	WP_000104439.1	GntP family transporter	-
C6N24_RS15670	-	2924976..2925212 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6N24_RS15675	-	2925223..2926650 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6N24_RS15680	-	2926650..2927243 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6N24_RS15685	-	2927390..2927797 (+)	408	WP_001208072.1	MarR family transcriptional regulator	-
C6N24_RS15690	rpoS	2927918..2928910 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6N24_RS15695	nlpD	2928973..2930067 (-)	1095	WP_306218436.1	murein hydrolase activator NlpD	-
C6N24_RS15700	pcm	2930252..2930878 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6N24_RS15705	surE	2930872..2931633 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6N24_RS15710	truD	2931614..2932663 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6N24_RS15715	ispF	2932660..2933139 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6N24_RS15720	ispD	2933139..2933849 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232064 C6N24_RS15690 WP_000081550.1 2927918..2928910(-) (rpoS) [Escherichia coli strain 2013C-3033]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232064 C6N24_RS15690 WP_000081550.1 2927918..2928910(-) (rpoS) [Escherichia coli strain 2013C-3033]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715