Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DRBB28_RS10730 Genome accession   NZ_CP021553
Coordinates   2337979..2339847 (-) Length   622 a.a.
NCBI ID   WP_106642126.1    Uniprot ID   -
Organism   Bifidobacterium breve strain DRBB28     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2332979..2344847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRBB28_RS10715 (DRBB28_2070) - 2333545..2334963 (-) 1419 WP_106621146.1 MFS transporter -
  DRBB28_RS10720 (DRBB28_2071) - 2335068..2336009 (+) 942 WP_016462703.1 FAD:protein FMN transferase -
  DRBB28_RS10725 (DRBB28_2072) rcrQ 2336018..2337847 (-) 1830 WP_019727589.1 ABC transporter ATP-binding protein Regulator
  DRBB28_RS10730 (DRBB28_2073) rcrP 2337979..2339847 (-) 1869 WP_106642126.1 ABC transporter ATP-binding protein Regulator
  DRBB28_RS10740 (DRBB28_2074) - 2340031..2340552 (-) 522 WP_016462706.1 MarR family winged helix-turn-helix transcriptional regulator -
  DRBB28_RS10745 - 2341178..2341402 (+) 225 WP_230473557.1 DUF1684 domain-containing protein -
  DRBB28_RS10750 (DRBB28_2075) - 2341490..2343013 (-) 1524 WP_106642127.1 amino acid permease -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68066.74 Da        Isoelectric Point: 5.3280

>NTDB_id=232039 DRBB28_RS10730 WP_106642126.1 2337979..2339847(-) (rcrP) [Bifidobacterium breve strain DRBB28]
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWVAGGKMLLVSLGSVCCAIITGCIAA
RVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVA
TAIAVVILLVAVVILMALVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAI
MMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTE
PIVKNGTKRAADIAKTGQTGTVEFKNVSFTYPDSREAMLQDINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQV
LVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTSAGRKREALQLATDAANDGKLTDE
QMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAK
EAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=232039 DRBB28_RS10730 WP_106642126.1 2337979..2339847(-) (rcrP) [Bifidobacterium breve strain DRBB28]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTATCGCCTTAGTGTCCATCGTCGGGCAAAT
CTGGTTCGACCTCGAACTGCCCGATTATATGTCAGATATCACCACCCTGGTCGAGACGCCGGGCAGCGCAATGGCGGACA
TCTGGGTCGCCGGCGGCAAGATGCTGCTGGTCTCGCTCGGCTCGGTCTGCTGCGCCATCATCACCGGTTGCATCGCGGCA
CGCGTGGCCTCCAGCTTCGGCCAGCGCCTGCGCTCGCTCGAATTCCGTAAGGTCGAATCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGTCTGC
AGCTCATTGTCAAGTCGCCGATCATGGCCGTGTGGGCTGTCTGCAAGATTGCCGGCGAGGGCTTCGAATGGACGGTCGCC
ACGGCCATAGCGGTCGTGATTCTGCTGGTCGCTGTCGTAATCCTCATGGCACTGGTCATGCCGAAGTTCAAGGCCATGCA
GAGGCTCACCGATAACATCAACCTCGTGGCCCGCGAGAATCTCACTGGTCTGCGGGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGTCCAAATTCACCAAGGCCAACAAGGATCTGACCGATACGCAGCTGTTCACCAACCGCACCATGGCCATC
ATGATGCCGCTGATGAACACGGTGATGAACGGCCTTATGCTCGCCGTCTACTGGATTGGCGCCTACCTGATCGAGGCCGC
CGAGCTTACCGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCGTGCAGGTGATTATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTTTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGATGGAAGTGTTGAACACCGAG
CCGATTGTGAAAAACGGCACCAAGCGCGCGGCCGACATCGCAAAGACCGGGCAGACCGGCACCGTGGAATTCAAGAACGT
GAGCTTCACCTACCCGGATTCGCGCGAGGCTATGCTGCAGGATATCAATTTCAAAGCCGAGAAGGGCCAGACCGTGGCGT
TCATCGGCTCTACCGGCTCGGGCAAGTCGTCGCTGATTAATCTCGTGCCGCGCTTCTACGACGTATCCGCCGGGCAAGTG
CTCGTCGACGGTGTGGACGTGCGCGACTATGACATGGTCGCCCTACGCGACAAGATCGGCTATGTACCGCAGCGCTCCGT
ATTGTTCAAGGGCACCGTGGCCGGCAACATCAGCTACGGCGACAAGCCCGGAGAGAACGACGCGGTCGAACTGGCGGATA
CTTCCACTTCCGCCGGCCGCAAGCGCGAGGCGCTTCAGCTGGCCACCGATGCCGCCAACGACGGCAAGTTGACAGACGAA
CAGATGAGCCGTGTCAAGGCCGCTGCCGACGTGGCCCAGGCCAGCGAATTCGTCAACCGCATGGACGGCGGATTCGATTC
GCCGATCGCACAAGGCGGCTCGAACGTGTCCGGTGGCCAGAAACAGCGTCTGTCCATCGCCCGCGCCGTCTACCGTCATC
CGGAAATCCTGATTTTCGATGACTCGTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTGCGAGACGCGCTCGCCAAG
GAAGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACGATCATGAACGCCGATCGCATCGTGGTGCTTGA
CGAGGGCAAGGTCGTGGGCCAAGGCACGCATAGGGAGCTGCTCGAGAACTGCGAAGTGTACCGACAGATTGCCGAATCCC
AGCTGAGTGAATCGGAACTGACTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(22-292)

ABC transporter (ABC_tran)

(359-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.259

100

0.49

Multiple sequence alignment