Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   C6N24_RS00690 Genome accession   NZ_CP027323
Coordinates   130122..130727 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 2013C-3033     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 125122..135727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N24_RS30610 - 125676..125774 (+) 99 Protein_118 hypothetical protein -
  C6N24_RS00655 rsmS 125827..125988 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  C6N24_RS00660 priC 126002..126529 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  C6N24_RS00665 ybaN 126599..126976 (+) 378 WP_001188905.1 DUF454 family protein -
  C6N24_RS00675 apt 127129..127680 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  C6N24_RS00680 dnaX 127809..129740 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  C6N24_RS00685 ybaB 129793..130122 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  C6N24_RS00690 recR 130122..130727 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  C6N24_RS00695 htpG 130837..132711 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  C6N24_RS00705 adk 132892..133536 (+) 645 WP_001220233.1 adenylate kinase -
  C6N24_RS00710 hemH 133772..134734 (+) 963 WP_001250088.1 ferrochelatase -
  C6N24_RS00715 aes 134731..135690 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=232032 C6N24_RS00690 WP_001195025.1 130122..130727(+) (recR) [Escherichia coli strain 2013C-3033]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=232032 C6N24_RS00690 WP_001195025.1 130122..130727(+) (recR) [Escherichia coli strain 2013C-3033]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment