Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C_RS24380 Genome accession   NC_004431
Coordinates   4924822..4925298 (-) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli CFT073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4919822..4930298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C_RS24340 (c5144) istA 4920004..4921503 (+) 1500 WP_000174402.1 IS21-like element ISEc10 family transposase -
  C_RS24345 (c5145) istB 4921500..4922255 (+) 756 WP_000065240.1 IS21-like element ISEc10 family helper ATPase IstB -
  C_RS24350 (c5146) - 4922321..4922839 (-) 519 Protein_4674 DUF4942 domain-containing protein -
  C_RS24355 (c5147) - 4922924..4923121 (-) 198 WP_000839291.1 DUF957 domain-containing protein -
  C_RS24360 (c5148) - 4923133..4923621 (-) 489 WP_000761667.1 DUF5983 family protein -
  C_RS24365 (c5149) - 4923618..4923995 (-) 378 WP_000854747.1 TA system toxin CbtA family protein -
  C_RS24370 (c5150) - 4924085..4924453 (-) 369 WP_024182258.1 type IV toxin-antitoxin system YeeU family antitoxin -
  C_RS24375 (c5151) - 4924532..4924753 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  C_RS24380 (c5152) radC 4924822..4925298 (-) 477 WP_001186756.1 JAB domain-containing protein Machinery gene
  C_RS24385 (c5155) - 4925313..4925798 (-) 486 WP_000860054.1 antirestriction protein -
  C_RS24390 (c5156) - 4925889..4926707 (-) 819 WP_001175140.1 DUF932 domain-containing protein -
  C_RS28070 (c5157) - 4926797..4927030 (-) 234 WP_001278280.1 DUF905 family protein -
  C_RS24395 (c5158) - 4927036..4927713 (-) 678 WP_001097307.1 hypothetical protein -
  C_RS24400 (c5160) - 4927861..4928541 (-) 681 WP_001282928.1 helix-turn-helix transcriptional regulator -
  C_RS24410 (c5162) - 4928744..4929628 (-) 885 WP_000010416.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=23202 C_RS24380 WP_001186756.1 4924822..4925298(-) (radC) [Escherichia coli CFT073]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=23202 C_RS24380 WP_001186756.1 4924822..4925298(-) (radC) [Escherichia coli CFT073]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment