Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6N21_RS10265 Genome accession   NZ_CP027317
Coordinates   1909878..1910393 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2015C-3107     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904878..1915393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N21_RS10240 ygaZ 1905277..1906014 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C6N21_RS10245 ygaH 1906004..1906339 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6N21_RS10250 emrR 1906430..1906960 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6N21_RS10255 emrA 1907087..1908259 (+) 1173 WP_001370257.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6N21_RS10260 emrB 1908276..1909814 (+) 1539 WP_001370184.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6N21_RS10265 luxS 1909878..1910393 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6N21_RS10270 gshA 1910543..1912099 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6N21_RS10275 yqaA 1912172..1912600 (-) 429 WP_001287454.1 YqaA family protein -
  C6N21_RS10280 yqaB 1912597..1913163 (-) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6N21_RS10310 csrA 1914621..1914806 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=231972 C6N21_RS10265 WP_001130211.1 1909878..1910393(-) (luxS) [Escherichia coli strain 2015C-3107]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=231972 C6N21_RS10265 WP_001130211.1 1909878..1910393(-) (luxS) [Escherichia coli strain 2015C-3107]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731