Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM366_RS18740 Genome accession   NZ_CP021535
Coordinates   3573935..3574564 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0119     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3568935..3579564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM366_RS18725 (AM366_18680) helD 3569177..3571231 (-) 2055 WP_000420533.1 DNA helicase IV -
  AM366_RS18730 (AM366_18685) yccF 3571354..3571800 (+) 447 WP_001261231.1 YccF domain-containing protein -
  AM366_RS18735 (AM366_18690) yccS 3571810..3573972 (+) 2163 WP_000875020.1 YccS family putative transporter -
  AM366_RS18740 (AM366_18695) sxy/tfoX 3573935..3574564 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM366_RS18745 (AM366_18700) sulA 3574783..3575292 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM366_RS18755 (AM366_18710) ompA 3575649..3576689 (+) 1041 WP_000750416.1 porin OmpA -
  AM366_RS18760 (AM366_18715) matP 3576765..3577217 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM366_RS18765 (AM366_18720) ycbZ 3577403..3579163 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=231957 AM366_RS18740 WP_000839153.1 3573935..3574564(-) (sxy/tfoX) [Escherichia coli strain AR_0119]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=231957 AM366_RS18740 WP_000839153.1 3573935..3574564(-) (sxy/tfoX) [Escherichia coli strain AR_0119]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment