Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MJ73_RS25175 Genome accession   NZ_CP027312
Coordinates   4872323..4872838 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 2013C-3181     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4867323..4877838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ73_RS25130 csrA 4867641..4867826 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  MJ73_RS25160 yqaB 4869553..4870119 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  MJ73_RS25165 yqaA 4870116..4870544 (+) 429 WP_001287457.1 YqaA family protein -
  MJ73_RS25170 gshA 4870617..4872173 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  MJ73_RS25175 luxS 4872323..4872838 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  MJ73_RS25180 emrB 4872902..4874440 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  MJ73_RS25185 emrA 4874457..4875629 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  MJ73_RS25190 emrR 4875756..4876286 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  MJ73_RS25195 ygaH 4876377..4876712 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  MJ73_RS25200 ygaZ 4876702..4877439 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=231944 MJ73_RS25175 WP_001130210.1 4872323..4872838(+) (luxS) [Escherichia coli strain 2013C-3181]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=231944 MJ73_RS25175 WP_001130210.1 4872323..4872838(+) (luxS) [Escherichia coli strain 2013C-3181]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737