Detailed information NTG0231941

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MJ73_RS24880
• Genome accession: NZ_CP027312
• Coordinates: 4816078..4817070 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-3181
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4811078..4822070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MJ73_RS24850	ispD	4811139..4811849 (+)	711	WP_045171841.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MJ73_RS24855	ispF	4811849..4812328 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MJ73_RS24860	truD	4812325..4813374 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
MJ73_RS24865	surE	4813355..4814116 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MJ73_RS24870	pcm	4814110..4814736 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
MJ73_RS24875	nlpD	4814921..4816015 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MJ73_RS24880	rpoS	4816078..4817070 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MJ73_RS24885	-	4817190..4817597 (-)	408	WP_001208062.1	MarR family transcriptional regulator	-
MJ73_RS24890	-	4817744..4818337 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
MJ73_RS24895	-	4818337..4819763 (+)	1427	Protein_4553	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
MJ73_RS24900	-	4819774..4820010 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
MJ73_RS24905	ygbN	4820049..4821413 (-)	1365	WP_106918696.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=231941 MJ73_RS24880 WP_000081550.1 4816078..4817070(+) (rpoS) [Escherichia coli strain 2013C-3181]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=231941 MJ73_RS24880 WP_000081550.1 4816078..4817070(+) (rpoS) [Escherichia coli strain 2013C-3181]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715