Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LJ_RS08675 Genome accession   NC_005362
Coordinates   1793186..1794994 (+) Length   602 a.a.
NCBI ID   WP_011162509.1    Uniprot ID   Q74HQ0
Organism   Lactobacillus johnsonii NCC 533     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1788186..1799994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ_RS08650 (LJ0586) - 1788567..1789349 (-) 783 WP_011162504.1 threonine/serine exporter family protein -
  LJ_RS08655 (LJ0585) - 1789366..1790913 (-) 1548 WP_011162505.1 ABC-F family ATP-binding cassette domain-containing protein -
  LJ_RS08660 (LJ0584) - 1790913..1791296 (-) 384 WP_011162506.1 hypothetical protein -
  LJ_RS08665 (LJ0583) - 1791521..1791793 (+) 273 WP_011162507.1 hypothetical protein -
  LJ_RS08670 (LJ0582) - 1791898..1793022 (-) 1125 WP_011162508.1 LCP family protein -
  LJ_RS08675 (LJ0581) pepF 1793186..1794994 (+) 1809 WP_011162509.1 oligoendopeptidase F Regulator
  LJ_RS08680 (LJ0580) - 1795063..1796574 (-) 1512 WP_011162510.1 L-lactate permease -
  LJ_RS08685 (LJ0579) - 1796696..1797487 (-) 792 WP_011162511.1 metal ABC transporter permease -
  LJ_RS08690 (LJ0578) - 1797487..1798146 (-) 660 WP_004898011.1 metal ABC transporter ATP-binding protein -
  LJ_RS08695 (LJ0577) - 1798183..1799082 (-) 900 WP_011162512.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  LJ_RS08700 (LJ0576) - 1799383..1799661 (-) 279 WP_011162513.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68638.37 Da        Isoelectric Point: 4.5924

>NTDB_id=23188 LJ_RS08675 WP_011162509.1 1793186..1794994(+) (pepF) [Lactobacillus johnsonii NCC 533]
MAIPTRNEVSDDLKWDLSRVFKDDQEWEQEYNRVAIEIKNLGRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKRAGVDMTKADYLKDAFNTFEERLNEFEKIVDELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=23188 LJ_RS08675 WP_011162509.1 1793186..1794994(+) (pepF) [Lactobacillus johnsonii NCC 533]
ATGGCTATTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCGGGTCGCAATCGAAATTAAAAATTTAGGTAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAGGGGATTACAGAAATTTTATCTGTGAATCGTCGTTTAGAAAAAGTATATGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAGATGAGCGCCGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCTTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAGATTACTGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTCAAGGGCA
CACTCTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCTGACGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTACGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCATTTCTATTACAACTTTTATGTTTACCAATATGCAACAGGCTTTGCTGCTGCTACAGCTC
TCGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACGTGCCGGTGTCGATATGACAAAGGCCGATTACTTAAAAGACGCATTTAACACCTTTGAAGA
ACGCCTTAATGAGTTTGAAAAAATCGTTGATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q74HQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.347

98.671

0.507

Multiple sequence alignment