Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6N22_RS12960 Genome accession   NZ_CP027310
Coordinates   2519683..2520198 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2014C-4135     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514683..2525198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N22_RS12945 yqaB 2516913..2517479 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6N22_RS12950 yqaA 2517476..2517904 (+) 429 WP_001287457.1 YqaA family protein -
  C6N22_RS12955 gshA 2517977..2519533 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6N22_RS12960 luxS 2519683..2520198 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6N22_RS12965 emrB 2520262..2521800 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6N22_RS12970 emrA 2521817..2522989 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6N22_RS12975 emrR 2523116..2523646 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6N22_RS12980 ygaH 2523737..2524072 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6N22_RS12985 ygaZ 2524062..2524799 (-) 738 WP_000445660.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=231839 C6N22_RS12960 WP_001130211.1 2519683..2520198(+) (luxS) [Escherichia coli strain 2014C-4135]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=231839 C6N22_RS12960 WP_001130211.1 2519683..2520198(+) (luxS) [Escherichia coli strain 2014C-4135]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731