Detailed information NTG0231836

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6N22_RS12655
• Genome accession: NZ_CP027310
• Coordinates: 2463021..2464013 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-4135
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2458021..2469013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N22_RS12625	ispD	2458082..2458792 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6N22_RS12630	ispF	2458792..2459271 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6N22_RS12635	truD	2459268..2460317 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6N22_RS12640	surE	2460298..2461059 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6N22_RS12645	pcm	2461053..2461679 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6N22_RS12650	nlpD	2461864..2462958 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C6N22_RS12655	rpoS	2463021..2464013 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6N22_RS12660	-	2464134..2464541 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6N22_RS12665	-	2464688..2465281 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6N22_RS12670	-	2465281..2466708 (+)	1428	WP_106904075.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6N22_RS12675	-	2466719..2466955 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6N22_RS12680	ygbN	2466994..2468358 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=231836 C6N22_RS12655 WP_000081550.1 2463021..2464013(+) (rpoS) [Escherichia coli strain 2014C-4135]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=231836 C6N22_RS12655 WP_000081550.1 2463021..2464013(+) (rpoS) [Escherichia coli strain 2014C-4135]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715