Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CCD81_RS03075 Genome accession   NZ_CP021523
Coordinates   531680..532348 (+) Length   222 a.a.
NCBI ID   WP_002259882.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 98-182     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526680..537348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD81_RS03050 (CCD81_03085) - 527532..527864 (+) 333 WP_002229316.1 hypothetical protein -
  CCD81_RS03055 (CCD81_03090) - 528196..528705 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CCD81_RS03060 (CCD81_03095) - 529222..529809 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD81_RS03070 (CCD81_03105) dnaB 529972..531378 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD81_RS03075 (CCD81_03110) pilH 531680..532348 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD81_RS03080 (CCD81_03115) pilV 532378..532998 (+) 621 WP_149323756.1 type IV pilus modification protein PilV Machinery gene
  CCD81_RS03085 (CCD81_03120) pilJ 532995..533948 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD81_RS03090 (CCD81_03125) pilK 533927..534520 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD81_RS03095 (CCD81_03130) pilX 534525..534998 (+) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  CCD81_RS03110 (CCD81_03155) - 536700..537128 (-) 429 Protein_529 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24781.37 Da        Isoelectric Point: 9.9145

>NTDB_id=231823 CCD81_RS03075 WP_002259882.1 531680..532348(+) (pilH) [Neisseria meningitidis strain 98-182]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSRFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=231823 CCD81_RS03075 WP_002259882.1 531680..532348(+) (pilH) [Neisseria meningitidis strain 98-182]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTCCTTCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTTAACCATA
TCGCTTTCGGTCAAACGCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment