Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C6N22_RS07215 Genome accession   NZ_CP027310
Coordinates   1413168..1413836 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 2014C-4135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1408168..1418836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N22_RS07180 yicC 1408187..1409050 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  C6N22_RS07190 rph 1409177..1409893 (+) 717 WP_001247093.1 ribonuclease PH -
  C6N22_RS07195 pyrE 1409959..1410600 (+) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  C6N22_RS07200 slmA 1410637..1411233 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  C6N22_RS07205 dut 1411340..1411798 (-) 459 WP_000976070.1 dUTP diphosphatase -
  C6N22_RS07210 coaBC 1411776..1412996 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  C6N22_RS07215 radC 1413168..1413836 (+) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  C6N22_RS07220 rpmB 1414053..1414289 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  C6N22_RS07225 rpmG 1414310..1414477 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  C6N22_RS07230 mutM 1414575..1415384 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  C6N22_RS07235 coaD 1415423..1415902 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  C6N22_RS07240 waaA 1415910..1417187 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  C6N22_RS07245 rfaQ 1417600..1418658 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=231817 C6N22_RS07215 WP_001298959.1 1413168..1413836(+) (radC) [Escherichia coli strain 2014C-4135]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=231817 C6N22_RS07215 WP_001298959.1 1413168..1413836(+) (radC) [Escherichia coli strain 2014C-4135]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment