Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCD82_RS10345 Genome accession   NZ_CP021522
Coordinates   1840591..1843755 (-) Length   1054 a.a.
NCBI ID   WP_079870292.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 06-178     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1835591..1848755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD82_RS10330 (CCD82_10520) yccS 1836359..1838509 (+) 2151 WP_002224737.1 YccS family putative transporter -
  CCD82_RS10340 (CCD82_10540) - 1839932..1840216 (-) 285 WP_002216166.1 GIY-YIG nuclease family protein -
  CCD82_RS10345 (CCD82_10545) pilC 1840591..1843755 (-) 3165 WP_079870292.1 PilC family type IV pilus tip adhesin Machinery gene
  CCD82_RS12555 - 1843720..1843878 (+) 159 WP_153310287.1 hypothetical protein -
  CCD82_RS10350 (CCD82_10555) pilA 1844415..1845680 (-) 1266 WP_002228837.1 signal recognition particle-docking protein FtsY Machinery gene
  CCD82_RS10355 (CCD82_10565) msrAB 1845826..1847394 (+) 1569 WP_002216163.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  CCD82_RS10360 (CCD82_10570) - 1847496..1847981 (-) 486 WP_002221794.1 CinA family protein -

Sequence

Protein


Download         Length: 1054 a.a.        Molecular weight: 115695.38 Da        Isoelectric Point: 9.5445

>NTDB_id=231803 CCD82_RS10345 WP_079870292.1 1840591..1843755(-) (pilC) [Neisseria meningitidis strain 06-178]
MNKTWKRQVFRHTALYTAILMFSHTGGGGGQAQAQTQTHKYAIVMNNQKLPEVKWGNDYSSLTDKSNEREVTHTSKFVVA
KKHISFSFNNTDEVVAEKKDAVVFGAATYLPPYGKVSGFDTAKLAERKNALDQIGTTHPGLIGYNYQDVTCASGNCPELS
YRTQFTFNNGLKRNGNGGRLDIYEDKSRDSSPIYKLKDYPWLGVSFNLGGESSFKPKRQGSLVSSFSEDVTQQNGTQDQY
KSKNLVYTTDDYNSKGNKNHQDKHHAVAFYLNAKLHLLDKKQIKNIAQGVTVDLGTLKTRIEPTDAWKNRQGSYFNNGTW
TYEEKGSVSVKLKLPEVKAGRCITTPNPNPKSKAPSPALTAPALWFGAGQDGKAEMYSASVSTYPDSSSSRIYLQNLKRK
TDSNRPGRYSLADLSASDIQSKEPTFTSRQTIIRLDGGVRHIQLDRNNEVTSFNGDNGTFGIVNEGSVVPESNEWKKVLL
PWTVRGFADDSKFKAFNKEKNNDNKPKYSQRYRIRENGNNGKRDLGDIVNSPIVAVGEYLATSANDGMVHIFKKGNGGDA
RDYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQVNNLNGQDRVFMFGAMGFGGRGAYALD
LTKADGNDPTKASLFDVKDNGNNGNNRVELGYTVGTPQIGKTHNGKYAAFLASGYATKEITSGENKTALYVYDLENNNGT
PIAKIEVPNGKGGLSSPTLVDKDLDGTIDIAYAGDRGGKMYRFDLSSQSPDQWTVRPIFEGTKPITSAPAISQLKDKRVV
IFGTGSDLSEDDVDKMDEQYIYGIFDDDTETTGNVKVDLKGLGGGLLEQHLTQEDKTLFLTDYKRSDGSGNKGWVVKLKD
GQRVTVKPTVVLRTAFVTIHKYTGNDKCGAETAILGINTADGGKLTKKSARPIVPDANTKVAQYSGDKKTSSGKSIPIGC
MQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRSGKNNRCFSQKGVRTLLMNDLDSLDITGP
TCGMKRISWREVFF

Nucleotide


Download         Length: 3165 bp        

>NTDB_id=231803 CCD82_RS10345 WP_079870292.1 1840591..1843755(-) (pilC) [Neisseria meningitidis strain 06-178]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAAGCGCAAACGCAAACGCATAAATACGCTATTGTAATGAACAATCAAAAGCTGCCTGAGGTAA
AGTGGGGGAACGACTATAGCTCATTGACGGACAAAAGCAATGAACGCGAAGTTACCCATACGAGTAAATTTGTTGTAGCA
AAAAAGCACATTAGTTTCTCATTCAATAATACCGATGAAGTTGTTGCTGAAAAAAAAGATGCTGTCGTTTTCGGCGCGGC
GACTTATCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATACCGCTAAGCTGGCCGAGCGCAAAAATGCCCTTGATCAGA
TTGGTACGACCCACCCTGGGTTGATAGGCTACAACTACCAAGATGTCACTTGCGCCAGCGGAAACTGTCCTGAACTTAGC
TATAGAACCCAATTTACCTTCAATAACGGGTTGAAAAGAAATGGAAACGGCGGCAGGCTGGATATATACGAAGACAAAAG
CCGCGACAGTTCGCCCATTTACAAATTGAAGGATTATCCTTGGTTGGGCGTGTCTTTCAATTTGGGCGGCGAGAGCTCCT
TCAAACCAAAGAGACAAGGTTCTTTGGTATCTTCTTTTAGCGAGGATGTGACGCAGCAAAATGGTACACAAGACCAATAC
AAAAGCAAAAACCTCGTTTATACGACAGACGATTACAATAGTAAGGGTAATAAAAACCATCAGGACAAACACCACGCCGT
CGCCTTTTATCTGAACGCCAAGCTGCATTTGCTGGATAAAAAACAAATCAAAAATATCGCGCAAGGCGTAACAGTTGATT
TGGGTACCTTGAAAACACGCATCGAGCCGACGGACGCGTGGAAAAACAGGCAGGGGAGCTATTTTAATAATGGTACTTGG
ACGTATGAAGAGAAAGGATCAGTCAGCGTCAAACTCAAATTGCCGGAAGTCAAAGCAGGCCGCTGCATCACCACACCGAA
CCCCAATCCCAAATCCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGAGCTGGGCAAGATGGTAAGG
CGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTACCTTCAAAATCTGAAAAGAAAA
ACCGACTCCAACAGACCCGGCCGCTATTCCCTCGCAGACTTGAGTGCGTCGGATATTCAAAGTAAAGAGCCGACTTTCAC
AAGTCGGCAAACAATCATCCGCTTGGATGGTGGCGTACGGCATATCCAACTGGATAGAAACAATGAGGTCACTAGTTTTA
ATGGCGACAACGGAACTTTCGGCATTGTTAATGAAGGGAGCGTCGTTCCTGAAAGCAACGAGTGGAAAAAAGTGCTGCTG
CCTTGGACGGTTCGGGGTTTTGCTGATGACAGTAAATTTAAAGCATTCAACAAAGAAAAAAACAACGACAACAAGCCAAA
ATACAGCCAAAGATACCGCATCCGCGAAAACGGCAACAACGGCAAGCGCGATTTGGGCGACATCGTCAACAGCCCCATCG
TGGCGGTCGGCGAGTATTTGGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCAAAAAAGGCAACGGCGGGGACGCG
CGCGACTATAGTCTGAAGCTCAGCTACATCCCGGGCACGATGCCGCGCAAGGATATTCAAAGTCAAGACTCCACCCTCGC
CAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCAAG
TTAACAACTTAAATGGGCAAGACCGCGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCAGAGGTGCGTATGCCTTGGAT
TTGACCAAAGCCGACGGCAATGACCCGACAAAAGCCTCTTTGTTTGATGTAAAAGATAATGGCAATAACGGCAATAATCG
CGTGGAATTAGGCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAAATACGCCGCTTTCCTCGCCTCCG
GTTATGCGACTAAAGAAATTACCAGCGGCGAGAATAAAACCGCGCTGTATGTGTATGATTTGGAAAACAACAACGGTACG
CCGATTGCAAAAATCGAAGTACCCAACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCAC
AATCGATATCGCCTATGCCGGCGATCGCGGCGGGAAAATGTACCGCTTTGATTTGAGCAGTCAAAGTCCTGATCAATGGA
CTGTACGCCCTATTTTTGAAGGCACAAAACCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTGGTC
ATCTTCGGCACGGGCAGCGATTTGAGTGAGGATGATGTTGATAAAATGGACGAACAATATATTTACGGTATCTTCGACGA
CGATACGGAGACGACGGGTAATGTAAAGGTAGACCTTAAAGGTTTGGGAGGCGGGCTGCTCGAGCAACACCTTACTCAGG
AAGATAAAACCTTATTCCTGACCGATTATAAGCGATCCGACGGCTCGGGCAATAAGGGCTGGGTAGTGAAATTGAAGGAC
GGACAGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCATAAATATACGGGTAATGACAA
ATGCGGCGCGGAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTG
TGCCGGACGCCAATACGAAGGTCGCGCAATATTCCGGCGATAAGAAAACTTCCAGCGGCAAATCCATCCCTATAGGTTGT
ATGCAAAAAGGCAATGAAATCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAA
GAAAACAGACGGATTTTCAACAACGGCAGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAAGCGTTCCGGCA
AAAACAACCGCTGCTTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCG
ACGTGCGGTATGAAACGAATCAGCTGGCGTGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(525-861)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

74.039

100

0.75

Multiple sequence alignment