Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   CCD82_RS03065 Genome accession   NZ_CP021522
Coordinates   529649..530602 (+) Length   317 a.a.
NCBI ID   WP_002259883.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 06-178     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524649..535602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD82_RS03035 (CCD82_03060) - 524850..525359 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  CCD82_RS03040 (CCD82_03065) - 525876..526463 (-) 588 WP_002222659.1 superoxide dismutase -
  CCD82_RS03050 (CCD82_03075) dnaB 526626..528032 (+) 1407 WP_002219448.1 replicative DNA helicase -
  CCD82_RS03055 (CCD82_03080) pilH 528334..529002 (+) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  CCD82_RS03060 (CCD82_03085) pilV 529032..529652 (+) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  CCD82_RS03065 (CCD82_03090) pilJ 529649..530602 (+) 954 WP_002259883.1 PilW family protein Machinery gene
  CCD82_RS03070 (CCD82_03095) pilK 530581..531174 (+) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CCD82_RS03075 (CCD82_03100) pilX 531179..531652 (+) 474 WP_002229319.1 PilX family type IV pilin Machinery gene
  CCD82_RS03090 (CCD82_03115) - 533465..533893 (-) 429 Protein_528 AzlC family ABC transporter permease -
  CCD82_RS03095 (CCD82_03120) dut 534035..534487 (+) 453 WP_002229326.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35030.78 Da        Isoelectric Point: 8.4318

>NTDB_id=231777 CCD82_RS03065 WP_002259883.1 529649..530602(+) (pilJ) [Neisseria meningitidis strain 06-178]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKDSLFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASADTTVVSSCA
AISKPGKQILNLEDVKKELKIVSQDKERNGNIARQRHVVNAYAVGRIAGEEGLFRFQLNEKGEWGNPQLLVKKINKMDIR
YIYVSGCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=231777 CCD82_RS03065 WP_002259883.1 529649..530602(+) (pilJ) [Neisseria meningitidis strain 06-178]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAGACTCTCTTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCC
GCAATATCGAAACCGGGTAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGA
GCGAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGG
TATATTTATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAG
CGCCCAAGATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAG
ACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

82.334

100

0.823

Multiple sequence alignment