Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C_RS21060 Genome accession   NC_004431
Coordinates   4242889..4243557 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli CFT073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4237889..4248557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C_RS21030 (c4456) rfaQ 4238067..4239125 (-) 1059 WP_000360415.1 lipopolysaccharide core heptosyltransferase RfaQ -
  C_RS21035 (c4457) waaA 4239538..4240815 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  C_RS21040 (c4458) coaD 4240823..4241302 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  C_RS21045 (c4459) mutM 4241341..4242150 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  C_RS21050 (c4460) rpmG 4242248..4242415 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  C_RS21055 (c4461) rpmB 4242436..4242672 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  C_RS21060 (c4462) radC 4242889..4243557 (-) 669 WP_001297375.1 RadC family protein Machinery gene
  C_RS21065 (c4463) coaBC 4243729..4244949 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  C_RS21070 (c4464) dut 4244927..4245385 (+) 459 WP_000976070.1 dUTP diphosphatase -
  C_RS21075 (c4465) slmA 4245492..4246088 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  C_RS21080 (c4466) pyrE 4246125..4246766 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  C_RS21085 (c4467) rph 4246832..4247548 (-) 717 WP_001247093.1 ribonuclease PH -
  C_RS21090 (c4468) yicC 4247675..4248538 (+) 864 WP_000621329.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=23177 C_RS21060 WP_001297375.1 4242889..4243557(-) (radC) [Escherichia coli CFT073]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=23177 C_RS21060 WP_001297375.1 4242889..4243557(-) (radC) [Escherichia coli CFT073]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment