Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CCD82_RS00345 Genome accession   NZ_CP021522
Coordinates   57686..60679 (-) Length   997 a.a.
NCBI ID   WP_149385543.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 06-178     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 61603..62568 57686..60679 flank 924


Gene organization within MGE regions


Location: 57686..62568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD82_RS00345 (CCD82_00365) pilC 57686..60679 (-) 2994 WP_149385543.1 PilC family type IV pilus tip adhesin Machinery gene
  CCD82_RS00360 (CCD82_00380) - 61603..62568 (+) 966 WP_002228915.1 IS30-like element IS1655 family transposase -

Sequence

Protein


Download         Length: 997 a.a.        Molecular weight: 109011.12 Da        Isoelectric Point: 9.6748

>NTDB_id=231763 CCD82_RS00345 WP_149385543.1 57686..60679(-) (pilC) [Neisseria meningitidis strain 06-178]
MNKQNQPEVKREGSYSTLREKDRKRKFDFNANNGGGGSVSFNNSDELVSRQNGTAVFGTATYLPPYGKVSGFDDKRLKER
GNAVNWIHTTHPGLIGYSYAGVVCRNSTGCPQLVYKTRFSFDNTGLAKNAGMLDSHPDPSRENSPIYKLKDYPWLGVSFN
LGSENTVKNSQSSNRLISSFSENNNNQTIVSTTESHPISLGDGQREHTAVVYYLNAKLHLLNKKQIQNITDKTVQLGVLK
PSIDVKTQRTGFGGILSFWASWDIKDTGQIPVKLGLQQVKAGRCVNANNPNKSTKAPSPALTAPALWFGPVQNGKVQMYS
ASVSTYPDSSSSRIYLQNLKRKDDPGRPGRYSLATLNKSDIESREPTFTGRQTVIRLDKGVHQIKLKGNEVEGFKGNNGN
DTFGIVSEGSFMPDASEWKKVLLPWTVRGFADDSKFKAFNKEKNNDNKPKYSQRYRIRENGNNGKRDLGDIVNSPIVAVG
EYLATSANDGMVHIFKKGNGGDARDYSLKLSYIPGTMPRKDIQSQDSTLAKELRAFAEKGYVGDRYGVDGGFVLRQVNNL
NGQDRVFMFGAMGFGGRGAYALDLTKADGNDPTKASLFDVKDNGNNGNNRVELGYTVGTPQIGKTHNGKYAAFLASGYAT
KEITSGENKTALYVYDLENNNGTPIAKIEVPNGKGGLSSPTLVDKDLDGTIDIAYAGDRGGKMYRFDLSSQSPDQWTVRP
IFEGTKPITSAPAISQLKDKRVVIFGTGSDLSEDDVDKMDEQYIYGIFDDDTETTGNVKVDLKGLGGGLLEQHLTQEDKT
LFLTDYKRSDGSGNKGWVVKLKDGQRVTVKPTVVLRTAFVTIHKYTGNDKCGAETAILGINTADGGKLTKKSARPIVPDA
NTKVAQYSGDKKTSSGKSIPIGCMQKGNEIVCPNGYVYDKPVNVRYLDEKKTDGFSTTADGDAGGSGIDPAGKRSGKNNR
CFSQKGVRTLLMNDLDSLDITGPTCGMKRISWREIFY

Nucleotide


Download         Length: 2994 bp        

>NTDB_id=231763 CCD82_RS00345 WP_149385543.1 57686..60679(-) (pilC) [Neisseria meningitidis strain 06-178]
ATGAACAAACAAAATCAGCCGGAGGTAAAGCGGGAGGGTTCATATTCAACCTTAAGGGAAAAAGACAGGAAACGCAAATT
TGACTTTAATGCGAACAACGGGGGTGGAGGCTCTGTCTCATTCAACAATAGCGATGAGCTTGTTTCTCGACAAAACGGTA
CTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATGACAAAAGGCTGAAAGAGCGC
GGCAATGCCGTTAATTGGATTCATACGACCCACCCAGGGTTGATAGGCTACAGCTACGCCGGTGTCGTATGCAGAAACAG
CACAGGCTGTCCCCAACTTGTCTATAAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATGCGGGCATGCTGG
ATAGTCACCCGGACCCAAGCCGCGAAAATTCGCCCATTTACAAATTGAAAGATTATCCATGGTTGGGCGTATCTTTCAAT
TTGGGCAGCGAGAATACCGTCAAAAATAGCCAATCATCCAACAGATTGATATCTTCTTTTAGTGAAAACAATAATAATCA
AACCATCGTCTCTACGACAGAAAGCCACCCTATTTCCCTTGGCGACGGGCAGCGCGAACATACCGCCGTGGTCTATTATC
TGAACGCCAAGCTGCACCTGCTGAATAAAAAACAGATTCAAAATATCACCGACAAAACAGTGCAGTTGGGTGTCTTGAAG
CCGAGCATCGATGTGAAGACACAAAGGACGGGGTTTGGCGGCATTCTATCTTTTTGGGCTAGTTGGGACATTAAAGATAC
CGGGCAGATTCCAGTCAAGCTCGGCCTGCAGCAAGTCAAAGCAGGCCGCTGCGTCAACGCAAATAACCCCAATAAGAGTA
CCAAAGCCCCTTCCCCCGCCCTGACTGCCCCCGCGCTGTGGTTCGGACCTGTGCAAAATGGTAAGGTGCAGATGTATTCC
GCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTACCTTCAAAATCTGAAAAGAAAAGACGACCCCGGCAG
ACCCGGCCGCTATTCCCTCGCAACCTTGAATAAGTCGGATATTGAAAGTCGAGAGCCGACTTTCACAGGGCGGCAAACCG
TCATCCGATTGGATAAAGGCGTACATCAGATCAAACTTAAAGGCAATGAGGTCGAAGGTTTTAAGGGAAACAACGGCAAC
GACACTTTCGGCATTGTTAGTGAAGGGAGCTTCATGCCTGATGCCAGCGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGT
TCGGGGTTTTGCTGATGACAGTAAATTTAAAGCATTCAACAAAGAAAAAAACAACGACAACAAGCCAAAATACAGCCAAA
GATACCGCATCCGCGAAAACGGCAACAACGGCAAGCGCGATTTGGGCGACATCGTCAACAGCCCCATCGTGGCGGTCGGC
GAGTATTTGGCTACTTCCGCCAACGACGGGATGGTGCATATCTTCAAAAAAGGCAACGGCGGGGACGCGCGCGACTATAG
TCTGAAGCTCAGCTACATCCCGGGCACGATGCCGCGCAAGGATATTCAAAGTCAAGACTCCACCCTCGCCAAAGAGCTGC
GCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCAAGTTAACAACTTA
AATGGGCAAGACCGCGTGTTTATGTTCGGCGCGATGGGCTTTGGCGGCAGAGGTGCGTATGCCTTGGATTTGACCAAAGC
CGACGGCAATGACCCGACAAAAGCCTCTTTGTTTGATGTAAAAGATAATGGCAATAACGGCAATAATCGCGTGGAATTAG
GCTACACCGTCGGCACGCCGCAAATCGGCAAAACCCACAACGGCAAATACGCCGCTTTCCTCGCCTCCGGTTATGCGACT
AAAGAAATTACCAGCGGCGAGAATAAAACCGCGCTGTATGTGTATGATTTGGAAAACAACAACGGTACGCCGATTGCAAA
AATCGAAGTACCCAACGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACAATCGATATCG
CCTATGCCGGCGATCGCGGCGGGAAAATGTACCGCTTTGATTTGAGCAGTCAAAGTCCTGATCAATGGACTGTACGCCCT
ATTTTTGAAGGCACAAAACCGATTACTTCCGCGCCCGCCATTTCCCAACTGAAAGACAAACGCGTGGTCATCTTCGGCAC
GGGCAGCGATTTGAGTGAGGATGATGTTGATAAAATGGACGAACAATATATTTACGGTATCTTCGACGACGATACGGAGA
CGACGGGTAATGTAAAGGTAGACCTTAAAGGTTTGGGAGGCGGGCTGCTCGAGCAACACCTTACTCAGGAAGATAAAACC
TTATTCCTGACCGATTATAAGCGATCCGACGGCTCGGGCAATAAGGGCTGGGTAGTGAAATTGAAGGACGGACAGCGCGT
TACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTAACCATCCATAAATATACGGGTAATGACAAATGCGGCGCGG
AAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGCCCGATTGTGCCGGACGCC
AATACGAAGGTCGCGCAATATTCCGGCGATAAGAAAACTTCCAGCGGCAAATCCATCCCTATAGGTTGTATGCAAAAAGG
CAATGAAATCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTATCTGGATGAAAAGAAAACAGACG
GATTTTCAACAACGGCAGACGGCGATGCGGGCGGCAGCGGTATAGACCCCGCCGGCAAGCGTTCCGGCAAAAACAACCGC
TGCTTCTCCCAAAAAGGGGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGACATTACCGGCCCGACGTGCGGTAT
GAAACGAATCAGCTGGCGTGAAATCTTCTACTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(468-804)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

79.403

100

0.8

Multiple sequence alignment