Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6N27_RS12860 Genome accession   NZ_CP027307
Coordinates   2316299..2316883 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-3108     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2311299..2321883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N27_RS12845 helD 2311541..2313595 (-) 2055 WP_001297106.1 DNA helicase IV -
  C6N27_RS12850 yccF 2313718..2314164 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6N27_RS12855 yccS 2314174..2316336 (+) 2163 WP_000875023.1 YccS family putative transporter -
  C6N27_RS12860 sxy/tfoX 2316299..2316883 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6N27_RS12865 sulA 2317147..2317656 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6N27_RS12875 ompA 2318013..2319053 (+) 1041 WP_000750416.1 porin OmpA -
  C6N27_RS12880 matP 2319129..2319581 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6N27_RS12885 ycbZ 2319767..2321527 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=231734 C6N27_RS12860 WP_077825616.1 2316299..2316883(-) (sxy/tfoX) [Escherichia coli strain 2015C-3108]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=231734 C6N27_RS12860 WP_077825616.1 2316299..2316883(-) (sxy/tfoX) [Escherichia coli strain 2015C-3108]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995