Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   CCD83_RS00680 Genome accession   NZ_CP021521
Coordinates   133015..135057 (+) Length   680 a.a.
NCBI ID   WP_002230821.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 09-292     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 128015..140057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD83_RS00655 (CCD83_00710) - 129047..129221 (+) 175 Protein_106 response regulator -
  CCD83_RS00660 (CCD83_00715) - 129217..130467 (+) 1251 WP_002219777.1 ATP-binding protein -
  CCD83_RS00665 (CCD83_00720) rng 130502..131995 (-) 1494 WP_002230820.1 ribonuclease G -
  CCD83_RS00670 (CCD83_00725) grxC 132208..132465 (+) 258 WP_002221441.1 glutaredoxin 3 -
  CCD83_RS00675 (CCD83_00730) secB 132486..132929 (+) 444 WP_002229859.1 protein-export chaperone SecB -
  CCD83_RS00680 (CCD83_00735) recG 133015..135057 (+) 2043 WP_002230821.1 ATP-dependent DNA helicase RecG Machinery gene
  CCD83_RS00685 - 136049..136165 (+) 117 Protein_112 IS5/IS1182 family transposase -
  CCD83_RS00690 (CCD83_00745) argC 136316..137359 (-) 1044 WP_002230819.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  CCD83_RS00695 (CCD83_00750) - 137356..137637 (-) 282 WP_002221438.1 hypothetical protein -
  CCD83_RS00705 (CCD83_00760) - 137891..139045 (+) 1155 WP_002234252.1 cupin domain-containing protein -
  CCD83_RS12905 (CCD83_00765) - 139054..139281 (+) 228 WP_002234251.1 hypothetical protein -
  CCD83_RS00715 (CCD83_00770) - 139274..139627 (+) 354 WP_002234250.1 hypothetical protein -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 75017.93 Da        Isoelectric Point: 7.2642

>NTDB_id=231717 CCD83_RS00680 WP_002230821.1 133015..135057(+) (recG) [Neisseria meningitidis strain 09-292]
MMSPETQKQLKITDVSAKKLDKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQI
ADGSGSVLFLRFIHFYASHQKQTAVGKRIRAVGEIKHGFYGDEMIHPKIRDAEGGGLAESLTPVYPTVNGLNQPTLRRII
QTALDVTPLHDTLPDALLCRLKLQHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGTA
AALGGDGTLTQALRHALPFALTDAQEKVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEI
LAEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRL
ALKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLGTCRKGRQAYWVCPLI
EESETLQLQTAAETLARLQTALPELNIGLVHGRMKAAEKAEVMARFSSGELNVLVATTVIEVGVDVPNAALMVIEHAERM
GLAQLHQLRGRVGRGAAESVCVLLFAEPLGELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFAKLEE
DLHLLEQAREIAPILIEQNPEIVEAHLARWLSGREGYLGV

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=231717 CCD83_RS00680 WP_002230821.1 133015..135057(+) (recG) [Neisseria meningitidis strain 09-292]
ATGATGTCGCCCGAAACCCAGAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGACAAACTCAACCTCCATAC
CGCGTGGGATTTGGTGTTGCACCTGCCGCTGCGTTACGAGGACGAGACGCACATTATGCCGATTAAGGACGCGCCGATTG
GCGTGCCGTGCCAGGTCGAGGGCGAGGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGTTGATTGTCCAAATC
GCCGACGGTTCCGGCAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGACGGCGGTCGGCAA
ACGCATCCGCGCCGTGGGCGAAATCAAACACGGCTTTTACGGCGACGAGATGATTCATCCCAAAATCCGCGATGCCGAGG
GCGGCGGTTTGGCGGAAAGCCTCACGCCGGTTTACCCGACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGTATTATT
CAGACGGCGTTGGACGTTACGCCGCTGCACGACACGCTGCCCGATGCCCTGCTGTGCCGTCTGAAGCTGCAACACCTCGC
CGAAAGCCTGCGTCTTTTGCATTCGCCGCCGCCGAGTTTCACGATTCATCAGCTTTCAGACGGCACGCTGCCTGCATGGC
AACGGCTCAAATTCGACGAACTTTTGGCGCAACAGTTGTCCATGCGGCTGGCGAGACAGAAGCGCGTCAGCGGCACGGCG
GCGGCATTGGGCGGCGACGGTACATTGACGCAAGCCCTGCGCCACGCCTTACCGTTTGCCCTGACTGATGCACAAGAAAA
AGTTGTTTCCGAAATCTGCCGCGACATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCA
AAACCATCGTCGCCGCCTTGTCTGCTTTGACGGCTATTGAATCCGGCGCACAGGTGGCTGTAATGGCGCCGACCGAAATC
CTTGCCGAACAGCACTTCATCAAGTTCAAACAATGGCTTGAGCCGTTGGGTCTCGAAGTTGTTTGGCTTTCCGGCAGTCA
GCGCAAAAAAGCCAAGGATGAAGCCAAAGCCAAACTGGCTGACGGCACCGTCAAAATCGCCGTCGGCACGCATGCCCTGT
TTTCAGACGACGTCGAGTTCCAAAATTTGGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGTGTCGCTCAACGCCTT
GCCCTCAAAAACAAAGGGCGCGACGTCCATCAATTGATGATGTCCGCCACGCCCATCCCGCGCACGCTTGCGATGAGTTT
TTTCGCCGATTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGGCGCACACCGATTAAAACGCGCCTCGTCAACAACG
TCCGCCGCGCCGAAGTCGAAGGCTTCGTCCTCGGCACTTGCCGAAAAGGGCGGCAGGCGTATTGGGTCTGCCCATTGATT
GAAGAAAGCGAAACCCTGCAACTGCAAACCGCCGCCGAAACCCTCGCCCGGCTTCAGACGGCATTGCCCGAACTCAATAT
CGGACTGGTACACGGGCGCATGAAGGCCGCCGAAAAGGCCGAAGTGATGGCGCGGTTTTCTTCGGGGGAGCTGAATGTCT
TGGTCGCCACCACCGTCATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATG
GGCTTGGCGCAGCTGCACCAATTACGCGGACGGGTAGGGCGCGGCGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGA
ACCCTTGGGCGAACTCGCCAAAGCGCGGTTGAAAGTGATTTACGAACACACCGACGGCTTTGAAATCGCCCGCCAAGACC
TCAACATCCGCGGCCCCGGCGAATTTCTCGGCGCGCGCCAAAGCGGCGTGCCTATGCTGCGTTTCGCCAAGCTCGAAGAA
GACTTACACCTTTTGGAACAAGCGCGCGAAATCGCCCCGATACTGATTGAGCAAAACCCCGAAATCGTCGAAGCGCATTT
GGCAAGATGGCTTTCCGGCAGGGAAGGGTATTTGGGCGTGTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(262-419)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(604-666)

RecG wedge domain (RecG_wedge)

(15-164)

Helicase conserved C-terminal domain (Helicase_C)

(468-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

97.206

100

0.972

Multiple sequence alignment