Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6N27_RS00665 Genome accession   NZ_CP027307
Coordinates   133722..134237 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-3108     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 128722..139237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N27_RS00620 csrA 129443..129628 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6N27_RS00650 yqaB 130952..131518 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6N27_RS00655 yqaA 131515..131943 (+) 429 WP_001287457.1 YqaA family protein -
  C6N27_RS00660 gshA 132016..133572 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6N27_RS00665 luxS 133722..134237 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  C6N27_RS00670 emrB 134301..135839 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6N27_RS00675 emrA 135856..137028 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6N27_RS00680 emrR 137155..137685 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6N27_RS00685 ygaH 137776..138111 (-) 336 WP_000119771.1 L-valine transporter subunit YgaH -
  C6N27_RS00690 ygaZ 138101..138838 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=231709 C6N27_RS00665 WP_001130207.1 133722..134237(+) (luxS) [Escherichia coli strain 2015C-3108]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=231709 C6N27_RS00665 WP_001130207.1 133722..134237(+) (luxS) [Escherichia coli strain 2015C-3108]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment